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2021

  1. Tsaballa A, Xanthopoulou A, Madesis P, Tsaftaris A, Nianiou-Obeidat I. Vegetable Grafting From a Molecular Point of View: The Involvement of Epigenetics in Rootstock-Scion Interactions. Front Plant Sci. 2021 Jan 7;11:621999. PMID: 33488662. doi: 10.3389/fpls.2020.621999.
  2. Stavridou E, Voulgari G, Michailidis M, Kostas S, Chronopoulou EG, Labrou NE, Madesis P, Nianiou-Obeidat I. Overexpression of A Biotic Stress-Inducible Pvgstu Gene Activates Early Protective Responses in Tobacco under Combined Heat and Drought. Int J Mol Sci. 2021 Feb 26;22(5):2352. PMID: 33652971. doi: 10.3390/ijms22052352.
  3. Stavridou E, Lagiotis G, Kalaitzidou P, Grigoriadis I, Bosmali I, Tsaliki E, Tsiotsiou S, Kalivas A, Ganopoulos I, Madesis P. Characterization of the Genetic Diversity Present in a Diverse Sesame Landrace Collection Based on Phenotypic Traits and EST-SSR Markers Coupled With an HRM Analysis. Plants (Basel). 2021 Mar 30;10(4):656. PMID: 33808174. doi: 10.3390/plants10040656.
  4. Osathanunkul M, et al.: Exploring plant diversity through soil DNA in Thai national parks for influencing land reform and agriculture planning. PeerJ. 2021 Aug 2;9:e11753. doi: 10.7717/peerj.11753. eCollection 2021. PMID: 34414025
  5. Andreadelli A, et al.: Effects of Magnesium Oxide and Magnesium Hydroxide Microparticle Foliar Treatment on Tomato PR Gene Expression and Leaf Microbiome. Microorganisms 2021, 9, doi:10.3390/microorganisms9061217. PMID: 34199815
  6. Miladinović D, et al.: Targeted plant improvement through genome editing: From lab to field. Plant Cell Reports 40, 935–951. https://doi.org/10.1007/s00299-020-02655-4. PMID: 33475781
  7. Sytar, Oet al.: . The Effects of Photosensitizing Dyes Fagopyrin and Hypericin on Planktonic Growth and Multicellular Life in Budding Yeast. Molecules, 26, 4708. https://doi.org/10.3390/molecules26164708. PMID: 34443298
  1. Galigalidou C, Zaragoza-Infante L, Iatrou A, Chatzidimitriou A, Stamatopoulos K, Agathangelidis A: Understanding Monoclonal B Cell Lymphocytosis: An Interplay of Genetic and Microenvironmental Factors, Front. Oncol., 11 November 2021. doi: 10.3389/fonc.2021.769612
  2. Gavriilidis GI. Et al.: Identifying Actionability as a Key Factor for the Adoption of 'Intelligent' Systems for Drug Safety: Lessons Learned from a User-Centred Design Approach. Drug Saf. 2021 Nov;44(11):1165-1178. doi: 10.1007/s40264-021-01103-w. Epub 2021 Oct 21. PMID: 34674190
  3. Kakalou C, et al.: RiskRadar: development and pilot results of a technical intervention targeting combination prevention regarding HIV, viral hepatitis, sexually transmitted infections and tuberculosis. BMC Infect Dis. 2021 Sep 13;21(Suppl 2):866. doi: 10.1186/s12879-021-06501-0. PMID: 34517826
  4. Natsiavas P, et al.: Developing an infrastructure for secure patient summary exchange in the EU context: Lessons learned from the KONFIDO project. Health Informatics J. 2021 Apr-Jun 27 (2): 14604582211021459. doi: 10.1177/14604582211021459. PMID: 34142613
  5. Natsiavas P, et al.: Using Business Process Management Notation to Model Therapeutic Prescription Protocols: The PrescIT Approach. Stud Health Technol Inform. 2021 May 27; 281:1089-1090. doi: 10.3233/SHTI210358. PMID: 34042851
  6. Dimitriadis VK, et al.: Pharmacovigilance and Clinical Environment: Utilizing OMOP-CDM and OHDSI Software Stack to Integrate EHR Data. Stud Health Technol Inform. 2021 May 27; 281:555-559. doi: 10.3233/SHTI210232. PMID: 34042637
  7. Lazarus JV, et al.: A Twitter discourse analysis of negative feelings and stigma related to NAFLD, NASH and obesity. Liver Int. 2021 Oct;41(10):2295-2307. doi: 10.1111/liv.14969. Epub 2021 Jun 8. PMID: 34022107
  8. Dimopoulos AC, et al.: Combining Multiple RNA-Seq Data Analysis Algorithms Using Machine Learning Improves Differential Isoform Expression Analysis. Methods Protoc. 2021 Sep 27;4(4):68. doi: 10.3390/mps4040068. PMID: 34698224
  9. Tsagiopoulou M, et al.: miRkit: R framework analyzing miRNA PCR array data. BMC Res Notes. 2021 Sep 26;14(1):376. doi: 10.1186/s13104-021-05788-1. PMID: 34565441
  10. Walsh I, et al.: DOME: recommendations for supervised machine learning validation in biology. Nat Methods. 2021 Oct;18(10):1122-1127. doi: 10.1038/s41592-021-01205-4. PMID: 34316068
  11. Tsagiopoulou M, et al.: UMIc: A Preprocessing Method for UMI Deduplication and Reads Correction. Front Genet. 2021 May 28;12:660366. doi: 10.3389/fgene.2021.660366. eCollection 2021. PMID: 34122513
  12. Pechlivanis N, et al.: A Computational Framework for Pattern Detection on Unaligned Sequences: An Application on SARS-CoV-2 Data. Front Genet. 2021 May 28;12:618170. doi: 10.3389/fgene.2021.618170. eCollection 2021. PMID: 34122498
  13. Austin CC, et al.: Fostering global data sharing: highlighting the recommendations of the Research Data Alliance COVID-19 working group. Wellcome Open Res. 2021 May 26;5:267. doi: 10.12688/wellcomeopenres.16378.2. eCollection 2020. PMID: 33501381
  14. Tsagiopoulou M, et al: UMIc: A Preprocessing Method for UMI Deduplication and Reads Correction. Front Genet. 2021 May 28;12:660366. doi: 10.3389/fgene.2021.660366. eCollection 2021. PMID: 34122513
  15. Lamprianidou E, et al.: Modulation of IL-6/STAT3 signaling axis in CD4+FOXP3- T cells represents a potential antitumor mechanism of azacitidine. Blood Adv. 2021 Jan 12;5(1):129-142. doi: 10.1182/bloodadvances.2020002351. PMID: 33570632
  16. Koukoulias K, et al.: "Cerberus" T Cells: A Glucocorticoid-Resistant, Multi-Pathogen Specific T Cell Product to Fight Infections in Severely Immunocompromised Patients. Front Immunol. 2021 Jan 18;11:608701. doi: 10.3389/fimmu.2020.608701. eCollection 2020. PMID: 33537032
  17. Meyerheim M, Karamanidou C, Payne S, Garani-Papadatos T, Sander A, Downing J, Stamatopoulos K, Ling J, Payne C, Scarfò L, Lokaj P, Maramis C, Graf N. MyPal-Child study protocol: an observational prospective clinical feasibility study of the MyPal ePRO-based early palliative care digital system in paediatric oncology patients. BMJ Open. 2021 Apr 13;11(4):e045226. PMID: 33849855. doi: 10.1136/bmjopen-2020-045226.
  18. Karamanidou C, Xochelli A, Papaioannou M, Moysiadis T, Scarfo L, Mattsson M, Stavroyianni N, Rosenquist R, Ghia P, Stamatopoulos K: Assessing Patients' Knowledge on Chronic Lymphocytic Leukemia: Validation of the ERIC CLL Knowledge Questionnaire in Greece. Hemasphere. 2021 Feb 23;5(3):e546. PMID: 33644697. doi: 10.1097/HS9.0000000000000546.
  19. Gerousi M, Psomopoulos F, Kotta K, Tsagiopoulou M, Stavroyianni N, Anagnostopoulos A, Anastasiadis A, Gkanidou M, Kotsianidis I, Ntoufa S, Stamatopoulos K: The Calcitriol/Vitamin D Receptor System Regulates Key Immune Signaling Pathways in Chronic Lymphocytic Leukemia. Cancers (Basel). 2021 Jan 14;13(2):285. PMID: 33466695. doi: 10.3390/cancers13020285.
  20. Böttcher M, et al.: Control of PD-L1 expression in CLL-cells by stromal triggering of the Notch-c-Myc-EZH2 oncogenic signaling axis. J Immunother Cancer. 2021 Apr;9(4):e001889. doi: 10.1136/jitc-2020-001889. PMID: 33931470
  21. Ferrer G, et al.: Myeloid-derived suppressor cell subtypes differentially influence T-cell function, T-helper subset differentiation, and clinical course in CLL. Leukemia. 2021 Nov;35(11):3163-3175. doi: 10.1038/s41375-021-01249-7. Epub 2021 May 2. PMID: 33935280
  22. Bonotis P, et al.: Randomization of Clinical Trial Participants via an Integrated Web Service. Stud Health Technol Inform. 2021 May 27;281:1124-1125. doi: 10.3233/SHTI210375. PMID: 34042868
  23. Ghia P, Stamatopoulos K.: In CLL, epigenetics also points to the BCR. Blood. 2021 May 27;137(21):2863-2865. doi: 10.1182/blood.2020010036. PMID: 34042978
  24. Vlachonikola E, et al.: The Significance of B-cell Receptor Stereotypy in Chronic Lymphocytic Leukemia: Biological and Clinical Implications. Hematol Oncol Clin North Am. 2021 Aug;35(4):687-702. doi: 10.1016/j.hoc.2021.03.003. Epub 2021 May 26. PMID: 34174980
  25. Payne SA, et al.: MyPal: Designing and Evaluating Digital Patient-Reported Outcome Systems for Cancer Palliative Care in Europe. J Palliat Med. 2021 Jul;24(7):962-964. doi: 10.1089/jpm.2021.0120. PMID: 34128712
  26. Vlachonikola E, et al.: T Cell Defects and Immunotherapy in Chronic Lymphocytic Leukemia. Cancers (Basel). 2021 Jun 29;13(13):3255. doi: 10.3390/cancers13133255. PMID: 34209724
  27. Chatzistamatiou K, et al.: Comparison of different strategies for the triage to colposcopy of women tested high-risk HPV positive on self-collected cervicovaginal samples. Gynecol Oncol. 2021 Sep;162(3):560-568. doi: 10.1016/j.ygyno.2021.06.020. Epub 2021 Jun 29. PMID: 34210517
  28. Ntoufa S, et al. RPS15 mutations rewire RNA translation in chronic lymphocytic leukemia. Blood Adv. 2021 Jul 13;5(13):2788-2792. doi: 10.1182/bloodadvances.2020001717. PMID: 34251413
  29. Koutroumani M, et al.: TAp63 and BCL2 expression are co-affected by cell-extrinsic signals in chronic lymphocytic leukemia. Leuk Lymphoma. 2021 Jul 29:1-4. doi: 10.1080/10428194.2021.1957870. Online ahead of print. PMID: 34323626
  30. Bakare AG, et al.: A review of limitations to using cassava meal in poultry diets and the potential role of exogenous microbial enzymes. Trop Anim Health Prod. 2021 Aug 2;53(4):426. doi: 10.1007/s11250-021-02853-6. PMID: 34338935
  31. Stewart JP, et al.: Validation of the EuroClonality-NGS DNA capture panel as an integrated genomic tool for lymphoproliferative disorders. Blood Adv. 2021 Aug 24;5(16):3188-3198. doi: 10.1182/bloodadvances.2020004056. PMID: 34424321
  32. Mansouri L, et al.: Precision diagnostics in lymphomas - Recent developments and future directions. Semin Cancer Biol. 2021 Oct 23:S1044-579X(21)00265-0. doi: 10.1016/j.semcancer.2021.10.007. Online ahead of print. PMID: 34699973
  33. Chatzikonstantinou T, et al.: COVID-19 severity and mortality in patients with CLL: an update of the international ERIC and Campus CLL study. Leukemia. 2021 Nov 1:1-11. doi: 10.1038/s41375-021-01450-8. Online ahead of print. PMID: 34725454
  34. Scarfò L, et al.: MyPal ADULT study protocol: a randomised clinical trial of the MyPal ePRO-based early palliative care system in adult patients with haematological malignancies. BMJ Open. 2021 Nov 2;11(11):e050256. doi: 10.1136/bmjopen-2021-050256. PMID: 34728446
  35. Gerousi M, et al.: Distinctive Signaling Profiles With Distinct Biological and Clinical Implications in Aggressive CLL Subsets With Stereotyped B-Cell Receptor Immunoglobulin. Front Oncol. 2021 Nov 3;11:771454. doi: 10.3389/fonc.2021.771454. eCollection 2021. PMID: 34804974
  36. Gavriilidis GI, Ntoufa S, Papakonstantinou N, Kotta K, Koletsa T, Chartomatsidou E, Moysiadis T, Stavroyianni N, Anagnostopoulos A, Papadaki E, Tsiftsoglou AS, Stamatopoulos K: Stem cell factor is implicated in microenvironmental interactions and cellular dynamics of chronic lymphocytic leukemia. Haematologica. 2021 Mar 1;106(3):692-700. PMID: 32336682. doi: 10.3324/haematol.2019.236513.
  37. Gemenetzi K, Psomopoulos F, Carriles AA, Gounari M, Minici C, Plevova K, Sutton LA, Tsagiopoulou M, Baliakas P, Pasentsis K, Anagnostopoulos A, Sandaltzopoulos R, Rosenquist R, Davi F, Pospisilova S, Ghia P, Stamatopoulos K, Degano M, Chatzidimitriou A: Higher-order immunoglobulin repertoire restrictions in CLL: the illustrative case of stereotyped subsets 2 and 169. Blood. 2021 Apr 8;137(14):1895-1904. PMID: 33036024. doi: 10.1182/blood.2020005216.
  38. Agathangelidis A, Galigalidou C, Scarfò L, Moysiadis T, Rovida A, Gounari M, Psomopoulos F, Ranghetti P, Galanis A, Davi F, Stamatopoulos K, Chatzidimitriou A, Ghia P: Infrequent "chronic lymphocytic leukemia-specific" immunoglobulin stereotypes in aged individuals with or without low-count monoclonal B-cell lymphocytosis. Haematologica. 2021 Apr 1;106(4):1178-1181. PMID: 32586905. doi: 10.3324/haematol.2020.247908.
  39. Vlachonikola E, Stamatopoulos K, Chatzidimitriou A: T Cells in Chronic Lymphocytic Leukemia: A Two-Edged Sword. Front Immunol. 2021 Jan 20;11:612244. PMID: 33552073. doi: 10.3389/fimmu.2020.612244.
  40. Rovida A, Maccalli C, Scarfò L, Dellabona P, Stamatopoulos K, Ghia P: Exploiting B-cell Receptor Stereotypy to Design Tailored Immunotherapy in Chronic Lymphocytic Leukemia. Clin Cancer Res. 2021 Feb 1;27(3):729-739. PMID: 33051305. doi: 10.1158/1078-0432.CCR-20-1632. Epub 2020 Oct 13.
  41. Sutton LA, Ljungström V, Enjuanes A, Cortese D, Skaftason A, Tausch E, Stano Kozubik K, Nadeu F, Armand M, Malcikova J, Pandzic T, Forster J, Davis Z, Oscier D, Rossi D, Ghia P, Strefford JC, Pospisilova S, Stilgenbauer S, Davi F, Campo E, Stamatopoulos K, Rosenquist R, On Behalf Of The European Research Initiative On Cll Eric: Comparative analysis of targeted next-generation sequencing panels for the detection of gene mutations in chronic lymphocytic leukemia: an ERIC multi-center study. Haematologica. 2021 Mar 1;106(3):682-691. PMID: 32273480. doi: 10.3324/haematol.2019.234716.
  42. Leeksma AC, Baliakas P, Moysiadis T, Puiggros A, Plevova K, Van der Kevie- Kersemaekers AM, Posthuma H, Rodriguez-Vicente AE, Tran AN, Barbany G, Mansouri L, Gunnarsson R, Parker H, Van den Berg E, Bellido M, Davis Z, Wall M, Scarpelli I, Österborg A, Hansson L, Jarosova M, Ghia P, Poddighe P, Espinet B, Pospisilova S, Tam C, Ysebaert L, Nguyen-Khac F, Oscier D, Haferlach C, Schoumans J, Stevens-Kroef M, Eldering E, Stamatopoulos K, Rosenquist R, Strefford JC, Mellink C, Kater AP: Genomic arrays identify high-risk chronic lymphocytic leukemia with genomic complexity: a multi-center study. Haematologica. 2021 Jan 1;106(1):87-97. PMID: 31974198. doi: 10.3324/haematol.2019.239947.
  43. Ioannou N, Hagner PR, Stokes M, Gandhi AK, Apollonio B, Fanous M, Papazoglou D, Sutton LA, Rosenquist R, Amini RM, Chiu H, Lopez-Girona A, Janardhanan P, Awan FT, Jones J, Kay NE, Shanafelt TD, Tallman MS, Stamatopoulos K, Patten PEM, Vardi A, Ramsay AG: Triggering interferon signaling in T cells with avadomide sensitizes CLL to anti-PD-L1/PD-1 immunotherapy. Blood. 2021 Jan 14;137(2):216-231. PMID: 33024998. doi: 10.1182/blood.2020006073.
  44. Agathangelidis A, Chatzidimitriou A, Gemenetzi K, Giudicelli V, Karypidou M, Plevova K, Davis Z, Yan XJ, Jeromin S, Schneider C, Pedersen LB, Tschumper RC, Sutton LA, Baliakas P, Scarfò L, van Gastel EJ, Armand M, Tausch E, Biderman B, Baer C, Bagnara D, Navarro A, Langlois de Septenville A, Guido V, Mitterbauer- Hohendanner G, Dimovski A, Brieghel C, Lawless S, Meggendorfer M, Brazdilova K, Ritgen M, Facco M, Tresoldi C, Visentin A, Patriarca A, Catherwood M, Bonello L, Sudarikov A, Vanura K, Roumelioti M, Skuhrova Francova H, Moysiadis T, Veronese S, Giannopoulos K, Mansouri L, Karan-Djurasevic T, Sandaltzopoulos R, Bödör C, Fais F, Kater A, Panovska I, Rossi D, Alshemmari S, Panagiotidis P, Costeas P, Espinet B, Antic D, Foroni L, Montillo M, Trentin L, Stavroyianni N, Gaidano G, Francia di Celle P, Niemann C, Campo E, Anagnostopoulos A, Pott C, Fischer K, Hallek M, Oscier D, Stilgenbauer S, Haferlach C, Jelinek D, Chiorazzi N, Pospisilova S, Lefranc MP, Kossida S, Langerak AW, Belessi C, Davi F, Rosenquist R, Ghia P, Stamatopoulos K: Higher-order connections between stereotyped subsets: implications for improved patient classification in CLL. Blood. 2021 Mar 11;137(10):1365-1376. PMID: 32992344. doi: 10.1182/blood.2020007039.
  45. Giallourou N, et al.: Characterizing the breast cancer lipidome and its interaction with the tissue microbiota. Commun Biol. 2021;4(1). PMID: 34707244. doi: 10.1038/s42003-021-02710-0.
  46. Jukes Z, et al.: Lipid Profiling of Mouse Intestinal Organoids for studying APC Mutations. Biosci Rep. 2021;41(3). PMID: 33620068. doi: 10.1042/BSR20202915.

2020

  1. Lagiotis G, Stavridou E, Bosmali I, Osathanunkul M, Haider N, Madesis P. Detection and quantification of cashew in commercial tea products using High Resolution Melting (HRM) analysis. J Food Sci. 2020 Jun;85(6):1629-1634. Epub 2020 May 29. PMID: 32468625. doi: 10.1111/1750-3841.15138.
  2. Anthimidou E, Ntoanidou S, Madesis P, Eleftherohorinos I. Mechanisms of Lolium rigidum multiple resistance to ALS- and ACCase-inhibiting herbicides and their impact on plant fitness. Pestic Biochem Physiol. 2020 Mar;164:65-72. Epub 2019 Dec 28. PMID: 32284138.doi: 10.1016/j.pestbp.2019.12.010.
  3. Leontidou K, Genitsaris S, Papadopoulou A, Kamou N, Bosmali I, Matsi T, Madesis P, Vokou D, Karamanoli K, Mellidou I. Plant growth promoting rhizobacteria isolated from halophytes and drought-tolerant plants: genomic characterisation and exploration of phyto-beneficial traits. Sci Rep. 2020 Sep 9;10(1):14857. PMID: 32908201. doi: 10.1038/s41598-020-71652-0.
  4. Zambounis A, Ganopoulos I, Tsaftaris A, Valasiadis D, Madesis P. Metagenomics analysis of fungal communities associated with postharvest diseases in pear fruits under the effect of management practices. Arch Microbiol. 2020 Nov;202(9):2391-2400. PMID: 32588084. doi: 10.1007/s00203-020-01960-6.
  5. Xanthopoulou A, Manioudaki M, Bazakos C, Kissoudis C, Farsakoglou AM, Karagiannis E, Michailidis M, Polychroniadou C, Zambounis A, Kazantzis K, Tsaftaris A, Madesis P, Aravanopoulos F, Molassiotis A, Ganopoulos I. Whole genome re-sequencing of sweet cherry (Prunus avium L.) yields insights into genomic diversity of a fruit species. Hortic Res. 2020 May 1;7:60. PMID: 32377351. doi: 10.1038/s41438-020-0281-9.
  6. Syropoulou F, Parlapani FF, Bosmali I, Madesis P, Boziaris IS. HRM and 16S rRNA gene sequencing reveal the cultivable microbiota of the European sea bass during ice storage. Int J Food Microbiol. 2020 Aug 16;327:108658. Epub 2020 May 11. PMID: 32464431. doi: 10.1016/j.ijfoodmicro.2020.108658.
  7. Stavridou E, Lagiotis G, Karapetsi L, Osathanunkul M, Madesis P. DNA Fingerprinting and Species Identification Uncovers the Genetic Diversity of Katsouni Pea in the Greek Islands Amorgos and Schinoussa. Plants (Basel). 2020 Apr 9;9(4):479. PMID: 32283704. doi: 10.3390/plants9040479.
  8. Zambounis A, Stefanidou E, Madesis P. Genotypic differentiation of Monilinia spp. populations in Serbia using a high-resolution melting (HRM) analysis, Plant Protection Science 2020 57, 38- 46. doi: 10.17221/35/2020-PPS
  9. Ntoanidou S, Madesis P, Menexes G, Eleftherohorinos I. Growth rate and genetic structure of Sinapis arvensis susceptible and herbicide resistant populations originating from Greece Euphytica 2020 216 1—13. doi: 10.1007/s10681-020-02723-6
  10. Karapetsi L, Nianiou-Obeidat I, Zambounis A, Osathanunkul M, Madesis P. Molecular screening of domestic apple cultivars for scab resistance genes in Greece Czech Journal of Genetics and Plant Breeding 2020 56, 165—169. doi: 10.17221/119/2019-CJGPB
  11. Zambounis A, Ganopoulos I, Valasiadis D, Karapetsi L, Madesis P. RNA sequencing-based transcriptome analysis of kiwifruit infected by Botrytis Physiological and Molecular Plant Pathology 2020 111, 101514. doi: 10.1016/j.pmpp.2020.101514
  12. Zagorcheva T, Rusanov K, Bosmali E, Madesis P, Tsvetkov I, Atanasov I. Sequence-related amplified polymorphism (SRAP) markers, an efficient and affordable tool for evaluation genetic diversity in forest areas Silva Balcanica 2020 21, 41. doi: 10.3897/silvabalcanica.21.e54699
  13. Kloukina C, Tomou EM, Krigas N, Sarropoulou V, Madesis P, Maloupa E, Skaltsa H. Non-polar secondary metabolites and essential oil of ex situ propagated and cultivated Sideritis syriaca L. subsp. syriaca (Lamiaceae) with consolidated identity (DNA Barcoding): towards a potential new industrial crop Industrial Crops and Products 2020 158, 112957. doi: 10.1016/j.indcrop.2020.112957
  14. Tsaballa A, Sarrou E, Xanthopoulou A, Tsaliki E, Kissoudis C, Karagiannis E, Michailidis M, Martens S, Sperdouli E, Hilioti Z, Fotopoulos V, Nianiou-Obeidat I, Tsaftaris A, Madesis P, Kalivas A, Ganopoulos I. Comprehensive approaches reveal key transcripts and metabolites highlighting metabolic diversity among three oriental tobacco varieties, Industrial Crops and Products, 2020, 143, 111933, doi: 10.1016/j.indcrop.2019.111933
  15. Lau CE, Taylor-Bateman V, Vorkas PA, Graça G, Vu TT, Hou L, Chekmeneva E, Ebbels TMD, Chan Q, Van Horn L, Holmes E. Metabolic Signatures of Gestational Weight Gain and Postpartum Weight Loss in a Lifestyle Intervention Study of Overweight and Obese Women. Metabolites. 2020 Dec 4;10(12):498. doi: 10.3390/metabo10120498.
  16. Hansen, N.L.; Miettinen, K.; Zhao, Y.; Ignea, C.; Andreadelli, A.; Raadam, M.H.; Makris, A.M.; Moller, B.L.; Staerk, D.; Bak, S., et al. Integrating pathway elucidation with yeast engineering to produce polpunonic acid the precursor of the anti-obesity agent celastrol. Microbial cell factories 2020, 19, 15, doi:10.1186/s12934-020-1284-9.
  17. Grigoriadou K, Trikka FA, Tsoktouridis G, Krigas N, Sarropoulou V, Papanastasi K, Maloupa E, Makris A.M. Μicropropagation and cultivation of Salvia sclarea for essential oil and sclareol production in northern Greece. In Vitro Cellular and Developmental Biology 2020; 56:51. ISSN: 1475-2689. doi:10.1007/s11627-019-10040-4
  18. Parlapani F.F., Ferrocino I., Michailidou S., Argiriou A., Haroutounian S.A., Kokokiris L., Rantsiou K., Boziaris I. Microbiota and volatilome profile of fresh and chill-stored deepwater rose shrimp (Parapenaeus longirostris). Food Research International (132) PMID: 32331667. doi: 10.1016/j.foodres.2020.109057
  19. Michailidis M, Karagiannis E, Tanou G, Samiotaki M, Tsiolas G, Sarrou E, Stamatakis G, Ganopoulos I, Martens S, Argiriou A, Molassiotis A: Novel insights into the calcium action in cherry fruit development revealed by high-throughput mapping. Plant Mol Biol. 2020; PMID: 32909183. doi: 10.1007/s11103-020-01063-2
  20. Gastineau R, Lemieux C, Turmel M, Grypioti E, Verret F, Makris A, Argiriou A, Kafetzopoulos D, Stratidaki I, Carrier G, Jacquette B, Mougeti JL. Two new bacilladnaviruses associated with the diatom Haslea ostrearia. EUROPEAN JOURNAL OF PHYCOLOGY, 2020. doi: 10.1080/09670262.2020.1748723
  21. Zambounis, A., Ganopoulos, I., Aravanopoulos, F., Hilioti, Z., Madesis, P., Molassiotis, A., Tsaftaris, A., Xanthopoulou, A. (2020). Genomics Opportunities and Breeding Strategies Towards Improvement of Climate-Smart Traits and Disease Resistance Against Pathogens in Sweet Cherry. Genomic Designing of Climate-Smart Fruit Crops: 385-404. In: Kole C. (eds) Genomic Designing of Climate-Smart Fruit Crops. Springer, Cham. doi: 10.1007/978-3-319-97946-5_10
  22. Zambounis A, Sytar O, Valasiadis D, Hilioti Z. Effect of photosensitisers on growth and morphology of Phytophthora citrophthora coupled with leaf bioassays in pear seedlings. Plant Protection Science 56: 74-82. doi: 10.17221/102/2019-pps
  1. Jaramillo S, Agathangelidis A, Schneider C, Bahlo J, Robrecht S, Tausch E, Bloehdorn J, Hoechstetter M, Fischer K, Eichhorst B, Goede V, Hallek M, Döhner H, Rosenquist R, Ghia P, Stamatopoulos K, Stilgenbauer S: Prognostic impact of prevalent chronic lymphocytic leukemia stereotyped subsets: analysis within prospective clinical trials of the German CLL Study Group (GCLLSG). Haematologica. 2020 Nov 1;105(11):2598-2607. PMID: 33131249. doi: 10.3324/haematol.2019.231027.
  2. Agathangelidis A, Galigalidou C, Scarfò L, Moysiadis T, Rovida A, Vlachonikola E, Sofou E, Psomopoulos F, Vardi A, Ranghetti P, Siorenta A, Galanis A, Stamatopoulos K, Chatzidimitriou A, Ghia P: High-throughput analysis of the T cell receptor gene repertoire in low-count monoclonal B cell lymphocytosis reveals a distinct profile from chronic lymphocytic leukemia. Haematologica. 2020 Oct 1;105(10):e515. PMID: 33054095. doi: 10.3324/haematol.2019.221275.
  3. Chatzistamatiou K, Vrekoussis T, Tsertanidou A, Moysiadis T, Mouchtaropoulou E, Pasentsis K, Kitsou A, Moschaki V, Ntoula M, Zempili P, Halatsi D, Truva T, Piha V, Agelena G, Daponte A, Vanakara P, Paschopoulos M, Stefos T, Lymberis V, Kontomanolis EN, Makrigiannakis A, Deligeoroglou E, Panoskaltsis T, Adonakis G, Michail G, Stamatopoulos K, Agorastos T: Acceptability of Self-Sampling for Human Papillomavirus-Based Cervical Cancer Screening. J Womens Health (Larchmt). 2020 Nov;29(11):1447-1456. PMID: 32757997. doi: 10.1089/jwh.2019.8258.
  4. Chatzidimitriou A, Minga E, Chatzikonstantinou T, Moreno C, Stamatopoulos K, Ghia P. Challenges and Solutions for Collecting and Analyzing Real World Data: The Eric CLL Database as an Illustrative Example. Hemasphere. 2020 Sep 30;4(5):e425. PMID: 33709059. doi: 10.1097/HS9.0000000000000425.
  5. Tsagiopoulou M, Chapaprieta V, Duran-Ferrer M, Moysiadis T, Psomopoulos F, Kollia P, Papakonstantinou N, Campo E, Stamatopoulos K, Martin-Subero JI. Chronic lymphocytic leukemias with trisomy 12 show a distinct DNA methylation profile linked to altered chromatin activation. Haematologica. 2020 Dec 1;105(12):2864-2867. PMID: 33256389. doi: 10.3324/haematol.2019.240721.
  6. Kotouza MT, Gemenetzi K, Galigalidou C, Vlachonikola E, Pechlivanis N, Agathangelidis A, Sandaltzopoulos R, Mitkas PA, Stamatopoulos K, Chatzidimitriou A, Psomopoulos FE; Hellenic Precision Medicine Network in Oncology. TRIP – T cell receptor/immunoglobulin profiler. BMC Bioinformatics. 2020 Sep 29;21(1):422. PMID: 32993478. doi: 10.1186/s12859-020-03669-1.
  7. Barbaglio F, Belloni D, Scarfò L, Sbrana FV, Ponzoni M, Bongiovanni L, Pavesi L, Zambroni D, Stamatopoulos K, Caiolfa VR, Ferrero E, Ghia P, Scielzo C: 3D co-culture model of chronic lymphocytic leukemia bone marrow microenvironment predicts patient-specific response to mobilizing agents. Haematologica. 2020 Jul 30. Epub ahead of print. PMID: 32732361. doi: 10.3324/haematol.2020.248112.
  8. Papadaki HA, Mavroudi I, Almeida A, Bux J, Cichy J, Dale DC, Donadieu J, Höglund P, Karanfilski O, Mecucci C, Palmblad J, Skokowa J, Stamatopoulos K, Touw I, Warren AJ, Welte K, Zeidler C, Dufour C: Congenital and Acquired Chronic Neutropenias: Challenges, Perspectives and Implementation of the EuNet-INNOCHRON Action. Hemasphere. 2020 Jun 8;4(3):e406. PMID: 32647804. doi: 10.1097/HS9.0000000000000406.
  9. Scarfò L, Chatzikonstantinou T, Rigolin GM, Quaresmini G, Motta M, Vitale C, Garcia-Marco JA, Hernández-Rivas JÁ, Mirás F, Baile M, Marquet J, Niemann CU, Reda G, Munir T, Gimeno E, Marchetti M, Quaglia FM, Varettoni M, Delgado J, Iyengar S, Janssens A, Marasca R, Ferrari A, Cuéllar-García C, Itchaki G, Špaček M, De Paoli L, Laurenti L, Levin MD, Lista E, Mauro FR, Šimkovič M, Van Der Spek E, Vandenberghe E, Trentin L, Wasik-Szczepanek E, Ruchlemer R, Bron D, De Paolis MR, Del Poeta G, Farina L, Foglietta M, Gentile M, Herishanu Y, Herold T, Jaksic O, Kater AP, Kersting S, Malerba L, Orsucci L, Popov VM, Sportoletti P, Yassin M, Pocali B, Barna G, Chiarenza A, Dos Santos G, Nikitin E, Andres M, Dimou M, Doubek M, Enrico A, Hakobyan Y, Kalashnikova O, Ortiz Pareja M, Papaioannou M, Rossi D, Shah N, Shrestha A, Stanca O, Stavroyianni N, Strugov V, Tam C, Zdrenghea M, Coscia M, Stamatopoulos K, Rossi G, Rambaldi A, Montserrat E, Foà R, Cuneo A, Ghia P: COVID-19 severity and mortality in patients with chronic lymphocytic leukemia: a joint study by ERIC, the European Research Initiative on CLL, and CLL Campus. Leukemia. Epub 2020 Jul 9. 2020 Sep;34(9):2354-2363. PMID: 32647324. doi: 10.1038/s41375-020-0959-x.
  10. Vardi A, Vlachonikola E, Papazoglou D, Psomopoulos F, Kotta K, Ioannou N, Galigalidou C, Gemenetzi K, Pasentsis K, Kotouza M, Koravou E, Scarfó L, Iskas M, Stavroyianni N, Ghia P, Anagnostopoulos A, Kouvatsi A, Ramsay AG, Stamatopoulos K, Chatzidimitriou A: T-Cell Dynamics in Chronic Lymphocytic Leukemia under Different Treatment Modalities. Clin Cancer Res. Epub 2020 Jul 2. 2020 Sep 15;26(18):4958-4969. PMID: 32616500. doi: 10.1158/1078-0432.CCR-19-3827.
  11. Karamanidou C, Maramis C, Stamatopoulos K, Koutkias V: Development of a ePRO-Based Palliative Care Intervention for Cancer Patients: A Participatory Design Approach. Stud Health Technol Inform. 2020 Jun 16;270:941-945. PMID: 32570520. doi: 10.3233/SHTI200300.
  12. Davi F, Langerak AW, de Septenville AL, Kolijn PM, Hengeveld PJ, Chatzidimitriou A, Bonfiglio S, Sutton LA, Rosenquist R, Ghia P, Stamatopoulos K; ERIC, the European Research Initiative on CLL, and the EuroClonality-NGS Working Group: Immunoglobulin gene analysis in chronic lymphocytic leukemia in the era of next generation sequencing. Leukemia. 2020 Oct;34(10):2545-2551. Epub 2020 Jun 19. PMID: 32561841. doi: 10.1038/s41375-020-0923-9.
  13. Belhouachi N, Xochelli A, Boudjoghra M, Lesty C, Cassoux N, Fardeau C, Tran THC, Choquet S, Sarker B, Houillier C, Alentorn A, LeHoang P, Soussain C, Touitou V, Merle-Beral H, Hoang-Xuan K, Bodaghi B, Stamatopoulos K, Davi F: Primary vitreoretinal lymphomas display a remarkably restricted immunoglobulin gene repertoire. Blood Adv. 2020 Apr 14;4(7):1357-1366. PMID: 32267931. doi: 10.1182/bloodadvances.2019000980.
  14. Fragiadaki I, Papadakis S, Sevastaki G, Sfyridaki K, Mavroudi I, Goulielmos GN, Kanellou P, Mörtberg A, Höglund P, Gemenetzi K, Stamatopoulos K, Chatzidimitriou A, Palmblad J, Papadaki HA: Increased frequency of the single nucleotide polymorphism of the DARC/ACKR1 gene associated with ethnic neutropenia in a cohort of European patients with chronic idiopathic neutropenia. Am J Hematol. 2020 Jul;95(7):E163-E166. Epub 2020 Apr 17. PMID: 32243614. doi: 10.1002/ajh.25813.
  15. Colombo M, Bagnara D, Reverberi D, Matis S, Cardillo M, Massara R, Mastracci L, Ravetti JL, Agnelli L, Neri A, Mazzocco M, Squillario M, Mazzarello AN, Cutrona G, Agathangelidis A, Stamatopoulos K, Ferrarini M, Fais F: Tracing CLL-biased stereotyped immunoglobulin gene rearrangements in normal B cell subsets using a high-throughput immunogenetic approach. Mol Med. 2020 Mar 10;26(1):25. PMID: 32156260. doi: 10.1186/s10020-020-00151-9.
  16. Gavriilaki E, Touloumenidou T, Sakellari I, Batsis I, Mallouri D, Psomopoulos F, Tsagiopoulou M, Koutra M, Yannaki E, Papalexandri A, Taylor P, Nikolousis E, Stamouli M, Holbro A, Baltadakis I, Liga M, Spyridonidis A, Tsirigotis P, Charchalakis N, Tsakiris DA, Brodsky RA, Passweg J, Stamatopoulos K, Anagnostopoulos A: Pretransplant Genetic Susceptibility: Clinical Relevance in Transplant-Associated Thrombotic Microangiopathy. Thromb Haemost. 2020 Apr;120(4):638-646. PMID: 32131130. doi: 10.1055/s-0040-1702225.
  17. Gemenetzi K, Agathangelidis A, Zaragoza-Infante L, Sofou E, Papaioannou M, Chatzidimitriou A, Stamatopoulos K: B Cell Receptor Immunogenetics in B Cell Lymphomas: Immunoglobulin Genes as Key to Ontogeny and Clinical Decision Making. Front Oncol. 2020 Jan 31;10:67. PMID: 32083012. doi: 10.3389/fonc.2020.00067.
  18. Maity PC, Bilal M, Koning MT, Young M, van Bergen CAM, Renna V, Nicolò A, Datta M, Gentner-Göbel E, Barendse RS, Somers SF, de Groen RAL, Vermaat JSP, Steinbrecher D, Schneider C, Tausch E, Bittolo T, Bomben R, Mazzarello AN, Del Poeta G, Kroes WGM, van Wezel JT, Imkeller K, Busse CE, Degano M, Bakchoul T, Schulz AR, Mei H, Ghia P, Kotta K, Stamatopoulos K, Wardemann H, Zucchetto A, Chiorazzi N, Gattei V, Stilgenbauer S, Veelken H, Jumaa H: IGLV3-21*01 is an inherited risk factor for CLL through the acquisition of a single-point mutation enabling autonomous BCR signaling. Proc Natl Acad Sci U S A. 2020 Feb 25;117(8):4320-4327. PMID: 32047037. doi: 10.1073/pnas.1913810117.
  19. Langerak AW, Davi F, Stamatopoulos K: Immunoglobulin heavy variable somatic hyper mutation status in chronic lymphocytic leukemia: on the threshold of a new era? Br J Haematol. 2020 Jun;189(5):809-810. Epub 2020 Jan 30. PMID: 32002980. doi: 10.1111/bjh.16480.
  20. Zucca E, Arcaini L, Buske C, Johnson PW, Ponzoni M, Raderer M, Ricardi U, Salar A, Stamatopoulos K, Thieblemont C, Wotherspoon A, Ladetto M; ESMO Guidelines Committee. Electronic address: clinicalguidelines@esmo.org. Marginal zone lymphomas: ESMO Clinical Practice Guidelines for diagnosis, treatment and follow-up. Ann Oncol. 2020 Jan;31(1):17-29. Epub 2019 Dec 4. PMID: 31912792. doi: 10.1016/j.annonc.2019.10.010.

2019

  1. Parlapani FF, Syropoulou F, Tsiartsafis A, Ekonomou S, Madesis P, Exadactylos A, Boziaris IS: HRM analysis as a tool to facilitate identification of bacteria from mussels during storage at 4 °C. Food Microbiol. 2020 Feb;85:103304. Epub 2019 Aug 17. PubMed PMID: 31500716. doi: https://doi.org/10.1016/j.fm.2019.103304
  2. Xanthopoulou A, Montero-Pau J, Mellidou I, Kissoudis C, Blanca J, Picó B, Tsaballa A, Tsaliki E, Dalakouras A, Paris H, Ganopoulou M, Moysiadis T, Osathanunkul M, Tsaftaris A, Madesis P, Kalivas A, Ganopoulos I: Whole-genome resequencing of Cucurbita pepo morphotypes to discover genomic variants associated with morphology and horticulturally valuable traits. Horticulture Research 2019 6 (1), 1-17. doi: https://doi.org/10.1038/s41438-019-0176-9
  3. Michailidis M, Karagiannis E, Tanou G, Sarrou E, Stavridou E, Ganopoulos I, Karamanoli K, Madesis P, Martens S, Molassiotis A: An integrated metabolomic and gene expression analysis identiies heat and calcium metabolic networks underlying postharvest sweet cherry fruit senescence. Planta 2019. doi: https://doi.org/10.1007/s00425-019-03272-6
  4. Gonias ED, Ganopoulos I, Mellidou I, Bibi AC, Kalivas A, Mylona, Osanthanunkul M, Tsaftaris A, Madesis P, Doulis AG: Exploring genetic diversity of tomato (Solanum lycopersicum L.) germplasm of genebank collection employing SSR and SCAR markers Genet Resour Crop Evol (2019). et al. pp 1–15, doi: 10.1007/s10722-019-00786-6
  5. Aliki Xanthopoulou, Christos Kissoudis, Ifigeneia Mellidou, Maria Manioudaki, Irene Bosmali, Vasilis Tsakonitis, Apostolos Kalivas, Maslin Osathanunkul, Athanasios Tsaftaris, Ioannis Ganopoulos, Panagiotis Madesis Expanding Phaseolus coccineus Genomic Resources: De Novo Transcriptome Assembly and Analysis of Landraces ‘Gigantes’ and ‘Elephantes’ Reveals Rich Functional Variation, Biochemical Genetics 2019, pp 1-20, PubMed: https://www.ncbi.nlm.nih.gov/pubmed/30997627, DOI: 10.1007/s10528-019-09920-6
  6. Abraham EM, Ganopoulos I, Madesis P, Mavromatis A, Mylona P, Nianiou-Obeidat I, Parissi Z, Polidoros A, Tani E, Vlachostergios D: The Use of Lupin as a Source of Protein in Animal Feeding: Genomic Tools and Breeding Approaches. Int J Mol Sci. 2019 Feb 15;20(4). pii: E851. Review. PubMed PMID: 30781397. doi: 10.3390/ijms20040851
  7. Ntoanidou S, Madesis P, Eleftherohorinos I: Resistance of Rapistrum rugosum to tribenuron and imazamox due to Trp574 or Pro197 substitution in the acetolactate synthase. Pestic Biochem Physiol. 2019 Feb;154:1-6. Epub 2018 Dec 4. PubMed PMID: 30765051. doi: 10.1016/j.pestbp.2018.12.001.
  8. Xanthopoulou A, Ganopoulos I, Tryfinopoulou P, Panagou EZ, Osanthanunkul M, Madesis P, Kizis D: Rapid and accurate identification of black aspergilli from grapes using high-resolution melting (HRM) analysis. J Sci Food Agric. 2019 Jan 15;99(1):309-314. Epub 2018 Jul 17. PubMed PMID: 29876941. doi: 10.1002/jsfa.9189.
  9. Xanthopoulou A, Tsaballa A, Ganopoulos I, Kapazoglou A, Avramidou E, Ravanopoulos F.A, Moysiadis T, Osathanunkul M., Tsaftaris A., Doulis A.G, Kalivas A, Sarrou E, Martens S, Nianiou-Obeidat I, Madesis P: Ιntra-species grafting induces epigenetic and metabolic changes accompanied by alterations in fruit size and shape of Cucurbita pepo L. (2019) Plant Growth Regulation, 87 (1), pp. 93-108. doi: 10.1007/s10725-018-0456-7
  10. Stavridou E, Michailidis M, Gedeon S, Ioakeim A, Kostas S, Chronopoulou E, Labrou NE, Edwards R, Day A, Nianiou-Obeidat I, Madesis P: Tolerance of Transplastomic Tobacco Plants Overexpressing a Theta Class Glutathione Transferase to Abiotic and Oxidative Stresses. Front Plant Sci. 2019 Jan 11;9:1861. eCollection 2018. PubMed PMID: 30687339. doi: 10.3389/fpls.2018.01861.
  1. Malousi A, Kouidou S, Tsagiopoulou M, Papakonstantinou N, Bouras E, Georgiou E, Tzimagiorgis G, Stamatopoulos K. MeinteR: A framework to prioritize DNA methylation aberrations based on conformational and cis-regulatory element enrichment. Sci Rep. 2019 Dec 16;9(1):19148. PMID: 31844073. doi: 10.1038/s41598-019-55453-8.
  2. Tsagiopoulou M, Papakonstantinou N, Moysiadis T, Mansouri L, Ljungström V, Duran-Ferrer M, Malousi A, Queirós AC, Plevova K, Bhoi S, Kollia P, Oscier D, Anagnostopoulos A, Trentin L, Ritgen M, Pospisilova S, Stavroyianni N, Ghia P, Martin-Subero JI, Pott C, Rosenquist R, Stamatopoulos K. DNA methylation profiles in chronic lymphocytic leukemia patients treated with chemoimmunotherapy. Clin Epigenetics. 2019 Dec 2;11(1):177. PMID: 31791414. doi: 10.1186/s13148-019-0783-1.
  3. Agorastos T, Chatzistamatiou K, Tsertanidou A, Mouchtaropoulou E, Pasentsis K, Kitsou A, Moysiadis T, Moschaki V, Skenderi A, Katsiki E, Aggelidou S, Venizelos I, Ntoula M, Daponte A, Vanakara P, Garas A, Stefos T, Vrekoussis T, Lymberis V, Kontomanolis EN, Makrigiannakis A, Manidakis G, Deligeoroglou E, Panoskaltsis T, Decavalas GO, Michail G, Kalogiannidis I, Koukoulis G, Zempili P, Halatsi D, Truva T, Piha V, Agelena G, Chronopoulou A, Vaitsi V, Chatzaki E, Paschopoulos M, Adonakis G, Kaufmann AM, Hadzidimitriou A, Stamatopoulos K. Implementation of HPV-based Cervical Cancer Screening Combined with Self- sampling Using a Midwifery Network Across Rural Greece: The GRECOSELF Study. Cancer Prev Res (Phila). 2019 Oct;12(10):701-710. Epub 2019 Aug 19. PMID: 31427275. doi: 10.1158/1940-6207.CAPR-19-0192.
  4. S. Diamantopoulos, D. Karamitros, L. Romano, L. Coppolino, V. Koutkias, K. Votis, O. Stan, P. Campegiani, D. Mari Martinez, M. Nalin, I. Baroni, F. Clemente, G. Faiella, C. Mesaritakis, E. Grivas, J. Rasmussen, J. Petersen, I. Cano, E. Puigdomenech, E. Gelenbe, J. Dumortier, and M. Voss-Knude-Voronkov, Secure Cross-border Exchange of Health Related Data: the KONFIDO Approach, In: R. Montella, A. Ciaramella, G. Fortino, A. Guerrieri and A. Liotta A. (eds), Internet and Distributed Computing Systems, 12th Int. Conf. on Internet and Distributed Computing Systems (IDCS2019), pp. 318-327, Lecture Notes in Computer Science, Vol. 11874, Springer, Cham, https://doi.org/10.1007/978-3-030-34914-1_30
  5. C. Maramis, C. Karamanidou, F. Schera, S. Kiefer, L. Koumakis, K. Marias, S. Hoffmann, H. Parker, J. Reston, S. Payne, S. Pospisilova, R. Rosenquist, P. Ghia, C. Pontikoglou, A. Sander, M. Doubek, N. Graf, J. Ling, J. Downing, E. Pavi and V. Koutkias, Using Electronic Patient Reported Outcomes to Foster Palliative Cancer Care: the MyPal Approach, in Proc. of BIBE2019, Oct. 27-30, 2019, Athens, Greece, https://doi.org/10.1109/BIBE.2019.00079
  6. S. Diamantopoulos, D. Karamitros, L. Romano, L. Coppolino, V. Koutkias, K. Votis, O. Stan, P. Campegiani, D. Mari Martinez, M. Nalin, I. Baroni, F. Clemente, G. Faiella, C. Mesaritakis, E. Grivas, J. Rasmussen, J. Petersen, I. Cano, E. Puigdomenech, E. Gelenbe, J. Dumortier, and M. Voss-Knude-Voronkov, Secure Cross-border Exchange of Health Related Data: the KONFIDO Approach, in Proc. of the 15th European Dependable Computing Conf. (EDCC2019), Sept. 17-20, 2019, Napoli, Italy, https://doi.org/10.1109/EDCC.2019.00024
  7. Koutkias V. From Data Silos to Standardized, Linked, and FAIR Data for Pharmacovigilance: Current Advances and Challenges with Observational Healthcare Data. Drug Saf. 2019 May;42(5):583-586. PMID: 30666591. doi: https://dx.doi.org/10.1007/s40264-018-00793-z
  8. Koutkias V, Bouaud J: Section Editors for the IMIA Yearbook Section on Decision Support. Contributions on Clinical Decision Support from the 2018 Literature. Yearb Med Inform. 2019 Aug;28(1):135-137. PMID: 31419825. doi: https://dx.doi.org/10.1055/s-0039-1677929
  9. Natsiavas P, Malousi A, Bousquet C, Jaulent MC, Koutkias V: Computational Advances in Drug Safety: Systematic and Mapping Review of Knowledge Engineering Based Approaches. Front Pharmacol. 2019 May 17;10:415. PMID: 31156424. doi: https://dx.doi.org/10.3389/fphar.2019.00415
  10. Livitckaia K, Koutkias V, Kouidi E, van Gils M, Maglaveras N, Chouvarda I: “OPTImAL”: an ontology for patient adherence modeling in physical activity domain. BMC Med Inform Decis Mak. 2019 Apr 25;19(1):92. PMID: 31023322. doi: https://dx.doi.org/10.1186/s12911-019-0809-9
  11. Brüggemann M, Kotrová M, Knecht H, Bartram J, Boudjogrha M, Bystry V, Fazio G, Froňková E, Giraud M, Grioni A, Hancock J, Herrmann D, Jiménez C, Krejci A, Moppett J, Reigl T, Salson M, Scheijen B, Schwarz M, Songia S, Svaton M, van Dongen JJM, Villarese P, Wakeman S, Wright G, Cazzaniga G, Davi F, García-Sanz R, Gonzalez D, Groenen PJTA, Hummel M, Macintyre EA, Stamatopoulos K, Pott C, Trka J, Darzentas N, Langerak AW; EuroClonality-NGS working group. Standardized next-generation sequencing of immunoglobulin and T-cell receptor gene recombinations for MRD marker identification in acute lymphoblastic leukaemia; a EuroClonality-NGS validation study. Leukemia. 2019 Sep;33(9):2241-2253. Epub 2019 Jun 26. PMID: 31243313. doi: 10.1038/s41375-019-0496-7.
  12. Knecht H, Reigl T, Kotrová M, Appelt F, Stewart P, Bystry V, Krejci A, Grioni A, Pal K, Stranska K, Plevova K, Rijntjes J, Songia S, Svatoň M, Froňková E, Bartram J, Scheijen B, Herrmann D, García-Sanz R, Hancock J, Moppett J, van Dongen JJM, Cazzaniga G, Davi F, Groenen PJTA, Hummel M, Macintyre EA, Stamatopoulos K, Trka J, Langerak AW, Gonzalez D, Pott C, Brüggemann M, Darzentas N; EuroClonality-NGS Working Group. Quality control and quantification in IG/TR next-generation sequencing marker identification: protocols and bioinformatic functionalities by EuroClonality-NGS. Leukemia. 2019 Sep;33(9):2254-2265. Epub 2019 Jun 21. PMID: 31227779. doi: 10.1038/s41375-019-0499-4.
  13. Chartomatsidou E, Ntoufa S, Kotta K, Rovida A, Akritidou MA, Belloni D, Ferrero E, Trangas T, Stavroyianni N, Anagnostopoulos A, Rosenquist R, Ghia P, Papakonstantinou N, Stamatopoulos K. Inhibition of EZH2 and immune signaling exerts synergistic antitumor effects in chronic lymphocytic leukemia. Blood Adv. 2019 Jun 25;3(12):1891-1896. PMID: 31227476. doi: 10.1182/bloodadvances.2018030262.
  14. Kosalai ST, Morsy MHA, Papakonstantinou N, Mansouri L, Stavroyianni N, Kanduri C, Stamatopoulos K, Rosenquist R, Kanduri M. EZH2 upregulates the PI3K/AKT pathway through IGF1R and MYC in clinically aggressive chronic lymphocytic leukaemia. Epigenetics. 2019 Nov;14(11):1125-1140. Epub 2019 Jun 26. PMID: 31216925. doi: 10.1080/15592294.2019.1633867.
  15. Scheijen B, Meijers RWJ, Rijntjes J, van der Klift MY, Möbs M, Steinhilber J, Reigl T, van den Brand M, Kotrová M, Ritter JM, Catherwood MA, Stamatopoulos K, Brüggemann M, Davi F, Darzentas N, Pott C, Fend F, Hummel M, Langerak AW, Groenen PJTA; EuroClonality-NGS Working Group. Next-generation sequencing of immunoglobulin gene rearrangements for clonality assessment: a technical feasibility study by EuroClonality-NGS. Leukemia. 2019 Sep;33(9):2227-2240. Epub 2019 Jun 13. PMID: 31197258. doi: 10.1038/s41375-019-0508-7.
  16. Tsanousa A, Ntoufa S, Papakonstantinou N, Stamatopoulos K, Angelis L. Study of gene expressions' correlation structures in subgroups of Chronic Lymphocytic Leukemia Patients. J Biomed Inform. 2019 Jul;95:103211. Epub 2019 May 18. PMID: 31108207. doi: 10.1016/j.jbi.2019.103211.
  17. Nalin M, Baroni I, Faiella G, Romano M, Matrisciano F, Gelenbe E, Martinez DM, Dumortier J, Natsiavas P, Votis K, Koutkias V, Tzovaras D, Clemente F: The European cross-border health data exchange roadmap: Case study in the Italian setting. J Biomed Inform. 2019 Jun;94:103183. PMID: 31009760. doi: https://dx.doi.org/10.1016/j.jbi.2019.103183
  18. Natsiavas P, Kakalou C, Votis K, Tzovaras D, Maglaveras N, Koutkias V: Requirements Elicitation for Secure and Interoperable Cross-Border Health Data Exchange: the KONFIDO Study. IET Software 2019;13(3):203-210. doi: https://doi.org/10.1049/iet-sen.2018.5292
  19. Natsiavas P, Jaulent MC, Koutkias V: A Knowledge-Based Platform for Assessing Potential Adverse Drug Reactions at the Point of Care: User Requirements and Design. Stud Health Technol Inform. 2019 Aug 21;264:1007-1011. PMID: 31438076. doi: https://dx.doi.org/10.3233/SHTI190376
  20. Kakalou C, Lazarus JV, Koutkias V: Mining Social Media for Perceptions and Trends on HIV Pre-Exposure Prophylaxis. Stud Health Technol Inform. 2019 Aug 21;264:959-963. PMID: 31438066. doi: https://dx.doi.org/10.3233/SHTI190366
  21. Natsiavas P, Kakalou C, Votis K, Tzovaras D, Koutkias V: Citizen Perspectives on Cross-Border eHealth Data Exchange: A European Survey. Stud Health Technol Inform. 2019 Aug 21;264:719-723. PMID: 31438018. doi: https://dx.doi.org/10.3233/SHTI190317
  22. Agathangelidis A, Psomopoulos F, Stamatopoulos K: Stereotyped B Cell Receptor Immunoglobulins in B Cell Lymphomas. Methods Mol Biol. 2019;1956:139-155. PubMed PMID: 30779034. doi: https://dx.doi.org/10.1007/978-1-4939-9151-8_7
  23. Moysiadis T, Baliakas P, Rossi D, Catherwood M, Strefford JC, Delgado J, Anagnostopoulos A, Belessi C, Stavroyianni N, Pospisilova S, Oscier D, Gaidano G, Campo E, Rosenquist R, Ghia P, Stamatopoulos K: Different time-dependent changes of risk for evolution in chronic lymphocytic leukemia with mutated or unmutated antigen B cell receptors. Leukemia. 2019 Jan 24. [Epub ahead of print] PubMed PMID: 30679797. doi: https://dx.doi.org/10.1038/s41375-018-0322-7
  24. Papalexandri A, Karypidou M, Stalika E, Kotta K, Touloumenidou T, Zerva P, Paleta A, Mallouri D, Batsis I, Sakellari I, Kotsianidis I, Anagnostopoulos A, Hadzidimitriou A, Margaritis D, Stamatopoulos K: Skewing of the T-cell receptor repertoire in patients receiving rituximab after allogeneic hematopoietic cell transplantation: what lies beneath? Leuk Lymphoma. 2019 Jan 17:1-8. [Epub ahead of print] PubMed PMID: 30652530. doi: https://dx.doi.org/10.1080/10428194.2018.1543881
  25. Gounari M, Ntoufa S, Gerousi M, Vilia MG, Moysiadis T, Kotta K, Papakonstantinou N, Scarfò L, Agathangelidis A, Fonte E, Ranghetti P, Nenou A, Xochelli A, Coscia M, Tedeschi A, Stavroyianni N, Muzio M, Stamatopoulos K, Ghia: Dichotomous Toll-like receptor responses in chronic lymphocytic leukemia patients under ibrutinib treatment. Leukemia. 2019 Apr;33(4):1030-1051. Epub 2019 Jan 3. PubMed PMID: 30607020. doi: https://dx.doi.org/10.1038/s41375-018-0335-2
  26. Baliakas P, Jeromin S, Iskas M, Puiggros A, Plevova K, NguyenKhac F, Davis Z, Rigolin GM, Visentin A, Xochelli A, Delgado J, Baran-Marszak F, Stalika E, Abrisqueta P, Durechova K, Papaioannou G, Eclache V, Dimou M, Iliakis T, Collado R, Doubek M, Calasanz MJ, Ruiz-Xiville N, Moreno C, Jarosova M, Leeksma AC, Panayiotidis P, Podgornik H, Cymbalista F, Anagnostopoulos A, Trentin L, Stavroyianni N, Davi F, Ghia P, Kater AP, Cuneo A, Pospisilova S, Espinet B, Athanasiadou A, Oscier D, Haferlach C, Stamatopoulos K: Cytogenetic complexity in chronic lymphocytic leukemia: definitions, associations and clinical impact. Blood. 2019 Mar 14;133(11):1205-1216. Epub 2019 Jan 2. PubMed PMID: 30602617. doi: https://dx.doi.org/10.1182/blood-2018-09-873083
  27. Xochelli A, Bikos V, Polychronidou E, Galigalidou C, Agathangelidis A, Charlotte F, Moschonas P, Davis Z, Colombo M, Roumelioti M, Sutton LA, Groenen P, van den Brand M, Boudjoghra M, Algara P, Traverse-Glehen A, Ferrer A, Stalika E, Karypidou M, Kanellis G, Kalpadakis C, Mollejo M, Pangalis G, Vlamos P, Amini RM, Pospisilova S, Gonzalez D, Ponzoni M, Anagnostopoulos A, Giudicelli V, Lefranc MP, Espinet B, Panagiotidis P, Piris MA, Du MQ, Rosenquist R, Papadaki T, Belessi C, Ferrarini M, Oscier D, Tzovaras D, Ghia P, Davi F, Hadzidimitriou A, Stamatopoulos K: Disease-biased and shared characteristics of the immunoglobulin gene repertoires in marginal zone B cell lymphoproliferations. J Pathol. 2019 Apr;247(4):416-421. Epub 2019 Jan 30. PubMed PMID: 30484876. doi: https://dx.doi.org/10.1002/path.5209

2018

  1. Osathanunkul Μ, Osathanunkul R, Madesis P: Species identification approach for both raw materials and end products of herbal supplements from Tinospora species.BMC Complementary and Alternative Medicine (2018) 18:111.; doi: 10.1186/s12906-018-2174-0
  2. Papaioanou M, Chronopoulou E. G., Ciobotari G, Efrose R. C., Sfichi-Duke L, Chatzikonstantinou M, Pappa E, Ganopoulos I, Madesis P, Nianiou-Obeidat I, Zeng T, Labrou N.E: Cosmeceutical Properties of Two Cultivars of Red Raspberry Grown under Different Conditions. Cosmetics 2018, 5, 20; doi: 10.3390/cosmetics5010020
  3. Chronopoulou EG, Papageorgiou AC, Ataya F, Nianiou-Obeidat I, Madesis P, Labrou NE: Expanding the Plant GSTome Through Directed Evolution: DNA Shuffling for the Generation of New Synthetic Enzymes With Engineered Catalytic and Binding Properties. Front Plant Sci. 2018 Nov 30;9:1737. eCollection 2018. PubMed PMID: 30555496. doi: 10.3389/fpls.2018.01737.
  4. Osathanunkul M, Osathanunkul K, Wongwanakul S, Osathanunkul R, Madesis P: Multiuse of Bar-HRM for Ophiocordyceps sinensis identification and authentication. Sci Rep. 2018 Aug 24;8(1):12770. PubMed PMID: 30143746. doi: 10.1038/s41598-018-31164-4.
  5. Ignea C, Pontini M, Motawia MS, Maffei ME, Makris AM, Kampranis SC: Synthesis of 11-carbon terpenoids in yeast using protein and metabolic engineering. Nat Chem Biol. 2018 Dec;14(12):1090-1098. PubMed PMID: 30429605. doi: 10.1038/s41589-018-0166-5
  6. Michailidou S, Tsangaris G, Fthenakis GC, Tzora A, Skoufos I, Karkabounas SC, Banos G, Argiriou A, Arsenos G: Genomic diversity and population structure of three autochthonous Greek sheep breeds assessed with genome-wide DNA arrays Mol Genet Genomics. 2018 Jun;293(3):753-768. PubMed PMID: 29372305. doi: 10.1007/s00438-018-1421-x
  7. Parlapani FF, Michailidou S, Pasentsis K, Argiriou A, Krey G, Boziaris IS: A meta-barcoding approach to assess and compare the storage temperature-dependent bacterial diversity of gilt-head sea bream (Sparus aurata) originating from fish farms from two geographically distinct areas of Greece Int J Food Microbiol. 2018 Aug 2;278:36-43. 29698856. doi: 10.1016/j.ijfoodmicro.2018.04.027
  8. Mougiou N, Trikka F, Trantas E, Ververidis F, Makris A, Argiriou A, Vlachonasios KE: Expression of hydroxytyrosol and oleuropein biosynthetic genes are correlated with metabolite accumulation during fruit development in olive, Olea europaea, cv. Koroneiki Plant Physiol Biochem. 2018 Jul;128:41-49. PubMed PMID: 29753981. doi: 10.1016/j.plaphy.2018.05.004
  9. Parlapani FF, Michailidou S, Anagnostopoulos DA, Sakellariou AK, Pasentsis K, Psomopoulos F, Argiriou A, Haroutounian SA, Boziaris IS: Microbial spoilage investigation of thawed common cuttlefish (Sepia officinalis) stored at 2 °C using next generation sequencing and volatilome analysis Food Microbiol. 2018 Dec;76:518-525. PubMed PMID: 30166182.doi: 10.1016/j.fm.2018.08.004
  10. Athanasakoglou A, Grypioti E, Michailidou S, Ignea C, Makris AM, Kalantidis K, Massé G, Argiriou A, Verret F, Kampranis SC: Isoprenoid biosynthesis in the diatom Haslea ostrearia New Phytol. 2018 Nov 5. PubMed PMID: 30394540.doi: 10.1111/nph.15586
  11. Michmizos D, Hilioti Z. A Roadmap Towards A Functional Paradigm For Learning & Memory In Plants. *Journal of Plant Physiology* 2018. doi: 10.1016/j.jplph.2018.11.002
  12. Bourtsala A, Dafnis I, Chroni A, Farmaki T, Galanopoulou D: Study of the Involvement of Phosphatidic Aμιψcid Formation in the Expression of Wound-Responsive Genes in Cotton. Lipids. 2018 Jun;53(6):589-599; Epub 2018 Sep
  13. PubMed PMID: 30198579. doi: 10.1002/lipd.12058
  14. Hilioti Z., 2018. Non-transgenic Approach to Deliver ZFNs in Seeds for Targeted Genome Engineering. In: Liu J. (eds) Zinc Finger Proteins. Methods Mol Biol, vol 1867. Humana Press, New York, NY. doi: 10.1007/978-1-4939-8799-3_14, ISBN: 978-1-4939-8798-6
  15. Karagiannis E, Michailidis M, Tanou G, Samiotaki M, Karamanoli K, Avramidou E, Ganopoulos I, Madesis P, Molassiotis A: Ethylene dependent and independent superficial scald resistance mechanisms in ‘Granny Smith’ apple fruit SCIENTIFIC REPORTS. 2018, 8:11436, doi: 10.1038/s41598-018-29706-x
  16. Ganopoulos I, Farsakoglou AM, Aravanopoulos F, Molassiotis A, Michailidis M, Malliarou E, Avramidou E, Tsaftaris A, Osanthanunkul M, Madesis P, Kazantzis K, Xanthopoulou Α: Towards sweet cherry (Prunus avium L.) breeding: phenotyping evaluation of newly developed hybrids. Euphytica (2018) 214: 99. doi: 10.1007/s10681-018-2179-2
  17. Stavridou E, Voulgari G, Bosmali I, Chronopoulou EG, Lo Cicero L, Lo Piero AR, Labrou EN, Tsaftaris A, Nianiou-Obeidat I, Madesis P: (2018) Plant Adaptation to Stress Conditions: The Case of Glutathione S-Transferases (GSTs). In: Vats S. (eds) Biotic and Abiotic Stress Tolerance in Plants. Springer, Singapore. Publisher NameSpringer, Singapore, Print ISBN978-981-10-9028-8, Online ISBN978-981-10-9029-5. doi: 10.1007/978-981-10-9029-5_7
  18. Abraham EM, Aftzalanidou A, Ganopoulos I, Osathanunkul M, Xanthopoulou A, Avramidou E, Sarrou E, Aravanopoulos F, Madesis P: Genetic diversity of Thymus sibthorpii Bentham in mountainous natural grasslands of Northern Greece as related to local factors and plant community structure. Ind Crop Prod 2018, 111:651-659. doi: 10.1016/j.indcrop.2017.11.038
  19. Madesis P: The Era of Genome Editing 2018 J. Clin Genom 1:1 (editorial).
  20. Ganopoulos I, Tourvas N, Xanthopoulou A, Aravanopoulos F, Avramidou E, Zambounis A, Tsaftaris A, Madesis P, Sotiropoulos T, Koutinas N: Phenotypic and molecular characterization of apple (Malus × domestica Borkh) genetic resources in Greece. Sci. Agric. v.75, n.6, p.509-518, November/December 2018. doi: 10.1590/1678-992X-2016-0499
  21. Ganopoulos I, Mylona P, Kalivas A, Osathanunkuld M, Madesis P: Microsatellite genotyping and molecular screening of pea (Pisum sativum L.) germplasm with high-resolution melting analysis for resistance to powdery mildew. 2018 Plant Gene 15: 1-5. doi: 10.1016/j.plgene.2018.05.004
  22. Pratsinakis E, Ntoanidou S, Polidoros A, Dordas C, Madesis P, Eleftherohorinos I, Menexes G: Comparison of hierarchical clustering methods for binary data from molecular markers Int. J. of Data Analysis Techniques and Strategies
  1. Malcikova J, Tausch E, Rossi D, Sutton LA, Soussi T, Zenz T, Kater AP, Niemann CU, Gonzalez D, Davi F, Gonzalez Diaz M, Moreno C, Gaidano G, Stamatopoulos K, Rosenquist R, Stilgenbauer S, Ghia P, Pospisilova S; European Research Initiative on Chronic Lymphocytic Leukemia (ERIC) — TP53 network: ERIC recommendations for TP53 mutation analysis in chronic lymphocytic leukemia-update on methodological approaches and results interpretation. Leukemia. 2018 Feb 2. [Epub ahead of print] Review. PubMed PMID: 29467486. doi: http://dx.doi.org/10.1038/s41375-017-0007-7
  2. Agathangelidis A, Ljungström V, Scarfò L, Fazi C, Gounari M, Pandzic T, Sutton LA, Stamatopoulos K, Tonon G, Rosenquist R, Ghia P: Highly similar genomic landscapes in monoclonal B-cell lymphocytosis and ultra-stable chronic lymphocytic leukemia with low frequency of driver mutations. Haematologica. 2018 Feb 15. pii: haematol.2017.177212. [Epub ahead of print] PubMed PMID: 29449433. doi: http://dx.doi.org/10.3324/haematol.2017.177212
  3. Agathangelidis A, Sutton LA, Hadzidimitriou A, Tresoldi C, Langerak AW, Belessi C, Davi F, Rosenquist R, Stamatopoulos K, Ghia P. Immunoglobulin Gene Sequence Analysis In Chronic Lymphocytic Leukemia: From Patient Material To Sequence Interpretation. J Vis Exp. 2018 Nov 26;(141). PMID: 30531723. doi: 10.3791/57787.
  4. Baliakas P, Moysiadis T, Hadzidimitriou A, Xochelli A, Jeromin S, Agathangelidis A, Mattsson M, Sutton LA, Minga E, Scarfò L, Rossi D, Davis Z, Villamor N, Parker H, Kotaskova J, Stalika E, Plevova K, Mansouri L, Cortese D, Navarro A, Delgado J, Larrayoz M, Young E, Anagnostopoulos A, Smedby KE, Juliusson G, Sheehy O, Catherwood M, Strefford JC, Stavroyianni N, Belessi C, Pospisilova S, Oscier D, Gaidano G, Campo E, Haferlach C, Ghia P, Rosenquist R, Stamatopoulos K: Tailored approaches grounded on immunogenetic features for refined prognostication in chronic lymphocytic leukemia. Haematologica. 2018 Sep 27. PubMed PMID: 30262567. doi: 10.3324/haematol.2018.195032
  5. Agathangelidis A, Rosenquist R, Davi F, Ghia P, Belessi C, Hadzidimitriou A, Stamatopoulos K: Immunoglobulin Gene Analysis in Chronic Lymphocytic Leukemia Methods Mol Biol. 2019;1881:51-62. PubMed PMID: 30350197.doi: 10.1007/978-1-4939-8876-1_5
  6. Vlachonikola E, Vardi A, Stamatopoulos K, Hadzidimitriou A: High-Throughput Sequencing of the T-Cell Receptor Beta Chain Gene Repertoire in Chronic Lymphocytic Leukemia Methods Mol Biol. 2019;1881:355-363. PubMed PMID: 30350216. doi: 10.1007/978-1-4939-8876-1_24
  7. Papakonstantinou N, Ntoufa S, Tsagiopoulou M, Moysiadis T, Bhoi S, Malousi A, Psomopoulos F, Mansouri L, Laidou S, Papazoglou D, Gounari M, Pasentsis K, Plevova K, Kuci-Emruli V, Duran-Ferrer M, Davis Z, Ek S, Rossi D, Gaidano G, Ritgen M, Oscier D, Stavroyianni N, Pospisilova S, Davi F, Ghia P, Hadzidimitriou A, Belessi C, Martin-Subero JI, Pott C, Rosenquist R, Stamatopoulos K: Integrated epigenomic and transcriptomic analysis reveals TP63 as a novel player in clinically aggressive chronic lymphocytic leukemia Int J Cancer. 2018 Nov 16. PubMed PMID: 30447004. doi: 10.1002/ijc.31999
  8. Polychronidou E, Kalamaras I, Agathangelidis A, Sutton LA, Yan XJ, Bikos V, Vardi A, Mochament K, Chiorazzi N, Belessi C, Rosenquist R, Ghia P, Stamatopoulos K, Vlamos P, Chailyan A, Overby N, Marcatili P, Hatzidimitriou A, Tzovaras D: Automated shape-based clustering of 3D immunoglobulin protein structures in chronic lymphocytic leukemia BMC Bioinformatics. 2018 Nov 20;19(Suppl 14):414. PubMed PMID: 30453883. doi: 10.1186/s12859-018-2381-1
  9. Natsiavas P, Rasmussen J, Voss-Knude M, Votis Κ, Coppolino L, Campegiani P, Cano I, Marí D, Faiella G, Clemente F, Nalin M, Grivas E, Stan O, Gelenbe E, Dumortier J, Petersen J, Tzovaras D, Romano L, Komnios I, Koutkias V: Comprehensive user requirements engineering methodology for secure and interoperable health data exchange. BMC Med Inform Decis Mak. 2018 Oct 16;18(1):85. PubMed PMID: 30326890. doi: 10.1186/s12911-018-0664-0
  10. Natsiavas P, Boyce RD, Jaulent MC, Koutkias V: OpenPVSignal: Advancing Information Search, Sharing and Reuse on Pharmacovigilance Signals via FAIR Principles and Semantic Web Technologies. Front Pharmacol. 2018 Jun 26;9:609, eCollection 2018. PubMed PMID: 29997499. doi: 10.3389/fphar.2018.00609
  11. Staffa M, Sgaglione L, Mazzeo G, Coppolino L, D’Antonio S, Romano L, Gelenbe E, Stan O, Carpov S, Grivas E, Campegiani P, Castaldo L, Votis K, Koutkias V, Komnios I: An OpenNCP-based Solution for Secure eHealth Data Exchange. Journal of Network and Computer Applications 2018;116(15):65–85. doi: 10.1016/j.jnca.2018.05.012
  12. Primo D, Scarfò L, Xochelli A, Mattsson M, Ranghetti P, Espinosa AB, Robles A, Gorrochategui J, Martínez-López J, de la Serna J, González M, Gil AC, Anguita E, Iraheta S, Munugalavadla V, Quéva C, Tannheimer S, Rosenquist R, Stamatopoulos K, Ballesteros J, Ghia P: A novel ex vivo high-throughput assay reveals antiproliferative effects of idelalisib and ibrutinib in chronic lymphocytic leukemia . Oncotarget. 2018 May 25;9(40):26019-26031, eCollection 2018 May 25. PubMed PMID: 29899839. doi: 10.18632/oncotarget.25419
  13. Blanco G, Vardi A, Puiggros A, Gómez-Llonín A, Muro M, Rodríguez-Rivera M, Stalika E, Abella E, Gimeno E, López-Sánchez M, Senín A, Calvo X, Abrisqueta P, Bosch F, Ferrer A, Stamatopoulos K, Espinet B: Restricted T cell receptor repertoire in CLL-like monoclonal B cell lymphocytosis and early stage CLL. Oncoimmunology. 2018 Feb 20;7(6):e1432328, PubMed PMID: 29872562. doi: 10.1080/2162402X.2018.1432328
  14. Maramis C, Gkoufas A, Vardi A, Stalika E, Stamatopoulos K,Hatzidimitriou A, Maglaveras N, Chouvarda I: IRProfiler – a software toolbox for high throughput immune receptor profiling. BMC Bioinformatics. 2018 Apr 18;19(1):144, PubMed PMID: 29669518. doi: 10.1186/s12859-018-2144-z

2017

  1. Zambounis A, Avramidou E, Papadima A, Tsaftaris A, Arzimanoglou I, Barbas E, Madesis P, Aravanopoulos FA: Adaptive response of Pinus monticola driven by positive selection upon resistance gene analogs (RGAs) of the TIR-NBS-LRR subfamily. iForest-Biogeosciences and Forestry 2017, 10(1):237. doi: http://dx.doi.org/10.3832/ifor2050-009
  2. Xanthopoulou A, Ganopoulos I, Bosmali I, Tsaftaris A, Madesis P: DNA Fingerprinting as a Novel Tool for Olive and Olive Oil Authentication, Traceability, and Detection of Functional Compounds. Olives and Olive Oil as Functional Foods: Bioactivity, Chemistry and Processing 2017:587-601. doi: http://dx.doi.org/10.1002/9781119135340.ch32
  3. Drosou V, Kapazoglou A, Koidou V, Merkouropoulos G, Hilioti Z: Spatial and temporal expression of cytosine-5 DNA methyltransferase and DNA demethylase gene families of the Ricinus communis during seed development and drought stress. Plant Growth Regulation 2017. doi: http://dx.doi.org/10.1007/s10725-10017-10323-y. http://rdcu.be/vRRq
  4. Hilioti Z, Michailof CM, Valasiadis D, Iliopoulou EF, Koidou V, Lappas AA: Characterization of castor plant-derived biochars and their effects as soil amendments on seedlings. Biomass and Bioenergy (105) 2017: 96-106. doi: http://dx.doi.org/10.1016/j.biombioe.2017.06.022
  5. Gago C, Drosou V, Paschalidis K, Guerreiro A, Miguel G, Antunes D, Hilioti Z: Targeted gene disruption coupled with metabolic screen approach to uncover the LEAFY COTYLEDON1-LIKE4 (L1L4) function in tomato fruit metabolism. Plant Cell Rep. 2017 Jul;36(7):1065-1082. Epub 2017 Apr 8. PubMed PMID: 28391527. doi: http://dx.doi.org/10.1007/s00299-017-2137-9. http://rdcu.be/qTif
  6. Bourtsala A, Farmaki T, Galanopoulou D: Phospholipases Dα and δ are involved in local and systemic wound responses of cotton (G. hirsutum). Biochem Biophys Rep. 2016 Dec 15;9:133-139. eCollection 2017 Mar. PubMed PMID: 28955998. doi: http://dx.doi.org/10.1016/j.bbrep.2016.12.001
  7. Merkouropoulos G, Hilioti Z, Abraham E, Lazaridou M: Evaluation of Lotus corniculatus L. accessions from different locations at different altitudes reveals phenotypic and genetic diversity. Grass and Forage Science 2017, doi: http://dx.doi.org/10.1111/gfs.12279
  8. Ignea C, Athanasakoglou A, Andreadelli A, Apostolaki M, Iakovides M, Stephanou EG, Makris AM, Kampranis SC: Overcoming the plasticity of plant specialized metabolism for selective diterpene production in yeast. Sci Rep. 2017 Aug 18;7(1):8855. PubMed PMID: 28821847. doi: http://dx.doi.org/10.1038/s41598-017-09592-5
  9. Osathanunkul M, Ounjai S, Osathanunkul R, Madesis P: Evaluation of a DNA-based method for spice/herb authentication, so you do not have to worry about what is in your curry, buon appetito! PLoS One. 2017 Oct 11;12(10):e0186283. eCollection 2017. PubMed PMID: 29020084. doi: http://dx.doi.org/10.1371/journal.pone.0186283
  10. Tanou G, Minas IS, Scossa F, Belghazi M, Xanthopoulou A, Ganopoulos I, Madesis P, Fernie A, Molassiotis A: Exploring priming responses involved in peach fruit acclimation to cold stress. Sci Rep. 2017 Sep 12;7(1):11358. PubMed PMID: 28900303. doi: http://dx.doi.org/10.1038/s41598-017-11933-3
  11. Bosmali I, Ordoudi SA, Tsimidou MZ, Madesis P: Greek PDO saffron authentication studies using species specific molecular markers. Food Res Int. 2017 Oct;100(Pt 1):899-907. Epub 2017 Aug 3. PubMed PMID: 28873765. doi: http://dx.doi.org/10.1016/j.foodres.2017.08.001
  12. Suesatpanit T, Osathanunkul K, Madesis P, Osathanunkul M: Should DNA sequence be incorporated with other taxonomical data for routine identifying of plant species?BMC Complement Altern Med. 2017 Aug 31;17(1):437. PubMed PMID: 28859638. doi: http://dx.doi.org/10.1186/s12906-017-1937-3
  13. Xanthopoulou Aliki, Ganopoulos Ioannis, Bosmali Irene, Tsaftaris Athanasios and Madesis Panagiotis Editors Kiritsakis A, Shahidi F: DNA fingerprinting as a novel tool for olive and olive oil authentication, traceability and detection of functional compounds: Book: Olives and Olive Oil as Functional Foods: Bioactivity, Chemistry and Processing:Edition John Wiley & Sons; 2017. ISBN: 978-1-119-13531-9. doi: http://dx.doi.org/10.1002/9781119135340.ch32
  14. Kalivas A, Ganopoulos I, Psomopoulos F, Grigoriadis I, Xanthopoulou A, Hatzigiannakis E, Osathanunkul M, Tsaftaris A, Madesis P: Comparative metagenomics reveals alterations in the soil bacterial community driven by N- fertilizer and Amino 16® application in lettuce. Genom Data. 2017 Aug 2;14:14-17. eCollection 2017 Dec. PubMed PMID: 28794989. doi: http://dx.doi.org/10.1016/j.gdata.2017.07.013
  15. Ganopoulos I, Kapazoglou A, Bosmali I, Xanthopoulou A, Nianiou-Obeidat I, Tsaftaris A, Madesis P: Application of the ITS2 region for barcoding plants of the genus Triticum L. and Aegilops L. Cereal Research Communications 2017:1-9. doi: http://dx.doi.org/10.1556/0806.45.2017.031
  16. Cicero LL, Catara V, Strano C, Bella P, Madesis P, Piero AL: Over-expression of CsGSTU promotes tolerance to the herbicide alachlor and resistance to Pseudomonas syringae pv. tabaci in transgenic tobacco. Biologia Plantarum 2017:1-9. doi: http://dx.doi.org/10.1007/s10535-016-0659-6
  17. Xanthopoulou A, Ganopoulos I, Psomopoulos F, Manioudaki M, Moysiadis T, Kapazoglou A, Osathanunkul M, Michailidou S, Kalivas A, Tsaftaris A, Nianiou-Obeidat I, Madesis P: De novo comparative transcriptome analysis of genes involved in fruit morphology of pumpkin cultivars with extreme size difference and development of EST-SSR markers. Gene. 2017 Jul 30;622:50-66. Epub 2017 Apr 21. PubMed PMID: 28435133. doi: http://dx.doi.org/10.1016/j.gene.2017.04.035
  18. Nianiou-Obeidat I, Madesis P, Kissoudis C, Voulgari G, Chronopoulou E, Tsaftaris A, Labrou NE: Plant glutathione transferase-mediated stress tolerance: functions and biotechnological applications. Plant Cell Rep. 2017 Jun;36(6):791-805. Epub 2017 Apr 8. Review. PubMed PMID: 28391528. doi: http://dx.doi.org/10.1007/s00299-017-2139-7
  19. Sarrou E, Ganopoulos I, Xanthopoulou A, Masuero D, Martens S, Madesis P, Mavromatis A, Chatzopoulou P: Genetic diversity and metabolic profile of Salvia officinalis populations: implications for advanced breeding strategies. Planta. 2017 Aug;246(2):201-215. Epub 2017 Mar 17. PubMed PMID: 28314999. doi: http://dx.doi.org/10.1007/s00425-017-2666-z
  1. Baliakas P, Mattsson M, Hadzidimitriou A, Minga E, Agathangelidis A, Sutton LA, Scarfo L, Davis Z, Yan XJ, Plevova K, Sandberg Y, Vojdeman FJ, Tzenou T, Chu CC, Veronese S, Mansouri L, Smedby KE, Giudicelli V, Nguyen-Khac F, Panagiotidis P, Juliusson G, Anagnostopoulos A, Lefranc MP, Trentin L, Catherwood M, Montillo M, Niemann CU, Langerak AW, Pospisilova S, Stavroyianni N, Chiorazzi N, Oscier D, Jelinek DF, Shanafelt T, Darzentas N, Belessi C, Davi F, Ghia P, Rosenquist R, Stamatopoulos K: No improvement in long-term survival over time for chronic lymphocytic leukemia patients in stereotyped subsets #1 and #2 treated with chemo(immuno)therapy. Haematologica. 2017 Dec 21. pii: haematol.2017.182634. [Epub ahead of print] PubMed PMID: 29269523. doi: http://dx.doi.org/10.3324/haematol.2017.182634
  2. Vardi A, Stamatopoulos K, Hadzidimitriou A: T cells in chronic lymphocytic leukemia: can they fight? Oncotarget. 2017 Nov 3;8(59):99209-99210. . eCollection 2017 Nov 21. PubMed PMID: 29245889. doi: http://dx.doi.org/10.18632/oncotarget.22277
  3. Polychronidou E, Xochelli A, Moschonas P, Papadopoulos S, Hatzidimitriou A, Vlamos P, Stamatopoulos K, Tzovaras D: Chronic Lymphocytic Leukemia Patient Clustering Based on Somatic Hypermutation (SHM) Analysis. Adv Exp Med Biol. 2017;988:127-138. PubMed PMID: 28971394. doi: http://dx.doi.org/10.1007/978-3-319-56246-9_10
  4. Alanis-Lobato G, Petrakis S: Editorial: Protein Interaction Networks and Disease: Highlights of the 3rd Challenges in Computational Biology Meeting. Genomics and Computational Biology 2017 Dec 4 (1), p. e100056. doi: http://dx.doi.org/10.18547/gcb.2018.vol4.iss1.e100056
  5. Agathangelidis A, Xochelli A, Stamatopoulos K: A Gene is known by the Company it Keeps: Enrichment of TNFAIP3 Gene Aberrations in Malt Lymphomas Expressing IGHV4-34 Antigen Receptors. J Pathol. 2017 Sep 11. [Epub ahead of print] PubMed PMID: 28892161. doi: http://dx.doi.org/10.1002/path.4982
  6. Agorastos T, Chatzistamatiou K, Moysiadis T, Kaufmann AM, Skenderi A, Lekka I, Koch I, Soutschek E, Boecher O, Kilintzis V, Angelidou S, Katsiki E, Hagemann I, Boschetti Gruetzmacher E, Tsertanidou A, Angelis L, Maglaveras N, Jansen-Duerr P: Human papillomavirus E7 protein detection as a method of triage to colposcopy of HPV positive women, in comparison to genotyping and cytology. Final results of the PIPAVIR study. Int J Cancer. 2017 Aug 1;141(3):519-530. Epub 2017 May 15. PubMed PMID: 28470689. doi: http://dx.doi.org/10.1002/ijc.30761
  7. Pal K, Bystry V, Reigl T, Demko M, Krejci A, Touloumenidou T, Stalika E, Tichy B, Ghia P, Stamatopoulos K, Pospisilova S, Malcikova J, Darzentas N; European Research Initiative on CLL (ERIC)—TP53 Network: GLASS: assisted and standardized assessment of gene variations from Sanger sequence trace data. Bioinformatics. 2017 Jul 13. [Epub ahead of print] PubMed PMID: 29036643. doi: http://dx.doi.org/10.1093/bioinformatics/btx423
  8. Chatzistamatiou K, Moysiadis T, Angelis E, Kaufmann A, Skenderi A, Jansen-Duerr P, Lekka I, Kilintzis V, Angelidou S, Katsiki E, Hagemann I, Tsertanidou A, Koch I, Boecher O, Soutschek E, Maglaveras N, Agorastos T: Diagnostic accuracy of high-risk HPV DNA genotyping for primary cervical cancer screening and triage of HPV-positive women, compared to cytology: preliminary results of the PIPAVIR study. Arch Gynecol Obstet. 2017 May;295(5):1247-1257. Epub 2017 Mar 23. PubMed PMID: 28337594. doi: http://dx.doi.org/10.1007/s00404-017-4324-x
  9. Ten Hacken E, Gounari M, Back JW, Shimanovskaya E, Scarfo L, Kim E, Burks J, Ponzoni M, Ramirez GA, Wierda WG, Estrov Z, Keating MJ, Ferrajoli A, Stamatopoulos K, Ghia P, Burger JA: Calreticulin as a novel B cell receptor antigen in chronic lymphocytic leukemia. Haematologica. 2017 Jul 27. pii: haematol.2017.169102. [Epub ahead of print] PubMed PMID: 28751563. doi: http://dx.doi.org/10.3324/haematol.2017.169102
  10. Rawstron AC, Ssemaganda A, de Tute R, Doughty C, Newton D, Vardi A, Evans PAS, Stamatopoulos K, Owen RG, Lightfoot T, Wakeham K, Karabarinde A, Asiki G, Newton R: Monoclonal B-cell lymphocytosis in a hospital-based UK population and a rural Ugandan population: a cross-sectional study. Lancet Haematol. 2017 Jul;4(7):e334-e340. PubMed PMID: 28668191. doi: http://dx.doi.org/10.1016/S2352-3026(16)30192-2
  11. Minici C, Gounari M, Übelhart R, Scarfò L, Dühren-von Minden M, Schneider D, Tasdogan A, Alkhatib A, Agathangelidis A, Ntoufa S, Chiorazzi N, Jumaa H, Stamatopoulos K, Ghia P, Degano M: Distinct homotypic B-cell receptor interactions shape the outcome of chronic lymphocytic leukaemia. Nat Commun. 2017 Jun 9;8:15746. PubMed PMID: 28598442. doi: http://dx.doi.org/10.1038/ncomms15746
  12. Sutton LA, Hadzidimitriou A, Baliakas P, Agathangelidis A, Langerak AW, Stilgenbauer S, Pospisilova S, Davis Z, Forconi F, Davi F, Ghia P, Rosenquist R, Stamatopoulos K; European Research Initiative on CLL (ERIC): Immunoglobulin genes in chronic lymphocytic leukemia: key to understanding the disease and improving riskstratification. Haematologica. 2017 Jun;102(6):968-971. PubMed PMID: 28566340. doi: http://dx.doi.org/10.3324/haematol.2017.165605
  13. Xochelli A, Baliakas P, Kavakiotis I, Agathangelidis A, Sutton LA, Minga E, Ntoufa S, Tausch E, Yan XJ, Shanafelt T, Plevova K, Boudjogra M, Rossi D, Davis Z, Navarro A, Sandberg Y, Vojdeman FJ, Scarfo L, Stavroyianni N, Sudarikov A, Veronese S, Tzenou T, Karan-Djurasevic T, Catherwood M, Kienle D, Chatzouli M, Facco M, Bahlo J, Pott C, Pedersen LB, Mansouri L, Smedby KE, Chu CC, Giudicelli V, Lefranc MP, Panagiotidis P, Juliusson G, Anagnostopoulos A, Vlahavas I, Antic D, Trentin L, Montillo M, Niemann C, Döhner H, Langerak AW, Pospisilova S, Hallek M, Campo E, Chiorazzi N, Maglaveras N, Oscier D, Gaidano G, Jelinek DF, Stilgenbauer S, Chouvarda I, Darzentas N, Belessi C, Davi F, Hadzidimitriou A, Rosenquist R, Ghia P, Stamatopoulos K: Chronic Lymphocytic Leukemia with Mutated IGHV4-34 Receptors: Shared and Distinct Immunogenetic Features and Clinical Outcomes. Clin Cancer Res. 2017 May 23. [Epub ahead of print] PubMed PMID: 28536306. doi: http://dx.doi.org/10.1158/1078-0432.CCR-16-3100
  14. Mastrodemou S, Stalika E, Vardi A, Gemenetzi K, Spanoudakis M, Karypidou M, Mavroudi I, Hadzidimitriou A, Stavropoulos-Giokas C, Papadaki HA, Stamatopoulos K: Cytotoxic T cells in chronic idiopathic neutropenia express restricted antigen receptors. Leuk Lymphoma. 2017 Dec;58(12):2926-2933. Epub 2017 May 23. PubMed PMID: 28535087. doi: 10.1080/10428194.2017.1324154
  15. Pouliou E, Xochelli A, Kanellis G, Stalika E, Sutton LA, Navarro A, Agathangelidis A, Dimosthenous K, Anagnostopoulos A, Patsouris E, Korkolopoulou P, Sundstrom C, Ghia P, Ponzoni M, Sander B, Campo E, Rosenquist R,Hadzidimitriou A, Stamatopoulos K, Papadaki T: Numerous Ontogenetic Roads to Mantle Cell Lymphoma: Immunogenetic and Immunohistochemical Evidence. Am J Pathol. 2017 Jul;187(7):1454-1458. Epub 2017 Apr 28. PubMed PMID: 28457696. doi: http://dx.doi.org/10.1016/j.ajpath.2017.02.017
  16. Rosenquist R, Ghia P, Hadzidimitriou A, Sutton LA, Agathangelidis A, Baliakas P, Darzentas N, Giudicelli V, Lefranc MP, Langerak AW, Belessi C, Davi F, Stamatopoulos K: Immunoglobulin gene sequence analysis in chronic lymphocytic leukemia: updated ERIC recommendations. Leukemia. 2017 Jul;31(7):1477-1481. Epub 2017 Apr 25. PubMed PMID: 28439111. doi: http://dx.doi.org/10.1038/leu.2017.125
  17. Langerak AW, Brüggemann M, Davi F, Darzentas N, van Dongen JJM, Gonzalez D, Cazzaniga G, Giudicelli V, Lefranc MP, Giraud M, Macintyre EA, Hummel M, Pott C, Groenen PJTA, Stamatopoulos K: EuroClonality-NGS Consortium. High-Throughput Immunogenetics for Clinical and Research Applications in Immunohematology: Potential and Challenges. J Immunol. 2017 May 15;198(10):3765-3774. Epub 2017 Apr 17. PubMed PMID: 28416603. doi: http://dx.doi.org/10.4049/jimmunol.1602050
  18. Ghia P, Nadel B, Sander B, Stamatopoulos K, Stevenson FK: Early stages in the ontogeny of small B-cell lymphomas: genetics and microenvironment. J Intern Med. 2017 Apr 10. [Epub ahead of print] PubMed PMID: 28393412. doi: http://dx.doi.org/10.1111/joim.12608
  19. Xochelli A, Oscier D, Stamatopoulos K: Clonal B-cell lymphocytosis of marginal zone origin. Best Pract Res Clin Haematol. 2017 Mar – Jun;30(1-2):77-83. Epub 2016 Nov 4. Review. PubMed PMID: 28288720. doi: http://dx.doi.org/10.1016/j.beha.2016.08.028
  20. Vilia MG, Fonte E, Veliz Rodriguez T, Tocchetti M, Ranghetti P, Scarfò L, Papakonstantinou N, Ntoufa S, Stamatopoulos K, Ghia P, Muzio M: The inhibitory receptor toll interleukin-1R 8 (TIR8/IL-1R8/SIGIRR) is downregulated in chronic lymphocytic leukemia. Leuk Lymphoma. 2017 Oct;58(10):2419-2425. Epub 2017 Feb 28. PubMed PMID: 28278705. doi: http://dx.doi.org/10.1080/10428194.2017.1295142
  21. Catera R, Liu Y, Gao C, Yan XJ, Magli A, Allen SL, Kolitz JE, Rai KR, Chu CC, Feizi T, Stamatopoulos K, Chiorazzi N: Binding of CLL subset 4 B-cell receptor immunoglobulins to viable human memory B lymphocytes requires a distinctive IGKV somatic mutation. Mol Med. 2017 Jan 12;23. [Epub ahead of print] PubMed PMID: 28097289. doi: http://dx.doi.org/10.2119/molmed.2017.00003
  22. Curiel-Olmo S, Mondéjar R, Almaraz C, Mollejo M, Cereceda L, Marès R, Derdak S, Campos-Martín Y, Batlle A, González de Villambrosía S, Gut M, Blanc J, Traverse-Glehen A, Verney A, Baseggio L, Camacho FI, Wotherspoon A, Stamatopoulos K, Xochelli A, Papadaki T, Kanellis G, Ponzoni M, García-Cosío M, Vaqué JP, Beltrán S, Gut I, Piris MA, Martínez N: Splenic diffuse red pulp small B-cell lymphoma displays increased expression of cyclin D3 and recurrent CCND3 mutations. Blood. 2017 Feb 23;129(8):1042-1045. Epub 2017 Jan 9. PubMed PMID: 28069605. doi: http://dx.doi.org/10.1182/blood-2016-11-751024
  23. Vardi A, Vlachonikola E, Karypidou M, Stalika E, Bikos V, Gemenetzi K, Maramis C, Siorenta A, Anagnostopoulos A, Pospisilova S, Maglaveras N, Chouvarda I, Stamatopoulos K, Hadzidimitriou A: Restrictions in the T-cell repertoire of chronic lymphocytic leukemia: high-throughput immunoprofiling supports selection by shared antigenic elements. Leukemia. 2017 Jul;31(7):1555-1561. Epub 2016 Nov 25. PubMed PMID: 27904140. doi: http://dx.doi.org/10.1038/leu.2016.362
  24. Young E, Noerenberg D, Mansouri L, Ljungström V, Frick M, Sutton LA, Blakemore SJ, Galan-Sousa J, Plevova K, Baliakas P, Rossi D, Clifford R, Roos-Weil D, Navrkalova V, Dörken B, Schmitt CA, Smedby KE, Juliusson G, Giacopelli B, Blachly JS, Belessi C, Panagiotidis P, Chiorazzi N, Davi F, Langerak AW, Oscier D, Schuh A, Gaidano G, Ghia P, Xu W, Fan L, Bernard OA, Nguyen-Khac F, Rassenti L, Li J, Kipps TJ, Stamatopoulos K, Pospisilova S, Zenz T, Oakes CC, Strefford JC, Rosenquist R, Damm F: EGR2 mutations define a new clinically aggressive subgroup of chronic lymphocytic leukemia. Leukemia. 2017 Jul;31(7):1547-1554. Epub 2016 Nov 28. PubMed PMID: 27890934. doi: http://dx.doi.org/10.1038/leu.2016.359
  25. Wren D, Walker BA, Brüggemann M, Catherwood MA, Pott C, Stamatopoulos K, Langerak AW, Gonzalez D: EuroClonality-NGS consortium. Comprehensive translocation and clonality detection in lymphoproliferative disorders by next-generation sequencing. Haematologica. 2017 Feb;102(2):e57-e60. Epub 2016 Oct 20. PubMed PMID: 27846615. doi: http://dx.doi.org/10.3324/haematol.2016.155424
  26. Stamatopoulos K, Agathangelidis A, Rosenquist R, Ghia P: Antigen receptor stereotypy in chronic lymphocytic leukemia. Leukemia. 2017 Feb;31(2):282-291. Epub 2016 Nov 4. Review. PubMed PMID: 27811850. doi: http://dx.doi.org/10.1038/leu.2016.322
  27. Gemenetzi K, Galigalidou C, Vlachonikola E, Stalika E, Xochelli A, Baliakas P, Karypidou M, Touloumenidou T, Minga E, Douka V, Iskas M, Athanasiadou A, Makris A, Stavroyianni N, Anagnostopoulos A, Hadzidimitriou A, Stamatopoulos K: Tp53 gene p72R polymorphism in chronic lymphocytic leukemia: incidence and clinical significance amongst cases with unmutated immunoglobulin receptors. Leuk Lymphoma. 2017 Mar;58(3):726-728. Epub 2016 Aug 9. PubMed PMID: 27686405. doi: http://dx.doi.org/10.1080/10428194.2016.1211276
  28. Triantafyllidis A, Filos D, Claes J, Buys R, Cornelissen V, Kouidi E, Chouvarda I, Maglaveras N: Computerised Decision Support in Physical Activity Interventions: A Systematic Literature Review. International Journal of Medical Informatics (in press), doi: http://dx.doi.org /10.1016/j.ijmedinf.2017.12.012.
  29. Chatzizisis YS, Toutouzas K, Giannopoulos AA, Riga M, Antoniadis AP, Fujinom Y, Mitsouras D, Koutkias VG, Cheimariotis G, Doulaverakis C, Tsampoulatidis I, Chouvarda I, Kompatsiaris I, Nakamura S, Rybicki FJ, Maglaveras N, Tousoulis D, Giannoglou GD: Association of Global and Local Low Endothelial Shear Stress with High-risk Plaque Using Intracoronary 3D Optical Coherence Tomography: Introduction of “Shear Stress Score”. Eur Heart J Cardiovasc Imaging. 2017 May 1;18(8):888-897. PubMed PMID: 27461211. doi: http://dx.doi.org/10.1093/ehjci/jew134.
  30. Boyce RD, Voss EA, Huser V, Evans L, Reich C, Duke JD, Tatonetti NP, Lorberbaum T, Dumontier M, Hauben M, Wallberg M, Peng L, Dempster S, He Y, Sena AG, Koutkias V, Natsiavas P, Ryan PB; Knowledge Base workgroup of the Observational Health Data Sciences and Informatics (OHDSI) collaborative. Large-scale adverse effects related to treatment evidence standardization (LAERTES): an open scalable system for linking pharmacovigilance evidence sources with clinical data. J Biomed Semantics. 2017 Mar 7;8(1):11. PubMed PMID: 28270198. doi: http://dx.doi.org/10.1186/s13326-017-0115-3
  31. Caron A, Chazard E, Muller J, Perichon R, Ferret L, Koutkias V, Beuscart R, Beuscart JB, Ficheur G: IT-CARES: an interactive tool for case-crossover analyses of electronic medical records for patient safety. J Am Med Inform Assoc. 2017 Mar 1;24(2):323-330. PubMed PMID: 27678461. doi: http://dx.doi.org/10.1093/jamia/ocw132
  32. Vaporidi K, Babalis D, Chytas A, Lilitsis E, Kondili E, Amargianitakis V, Chouvarda I, Maglaveras N, Georgopoulos D: Clusters of ineffective efforts during mechanical ventilation: impact on outcome. Intensive Care Med. 2017 Feb;43(2):184-191. Epub 2016 Oct 24. PubMed PMID: 27778044. doi: http://dx.doi.org/10.1007/s00134-016-4593-z
  33. Kavakiotis I, Tsave O, Salifoglou A, Maglaveras N, Vlahavas I, Chouvarda I: Machine Learning and Data Mining Methods in Diabetes Research. Comput Struct Biotechnol J. 2017 Jan 8;15:104-116. eCollection 2017. Review. PubMed PMID: 28138367. doi: http://dx.doi.org/10.1016/j.csbj.2016.12.005
  34. Claes J, Buys R, Woods C, Briggs A, Geue C, Aitken M, Moyna N, Moran K, McCaffrey N, Chouvarda I, Walsh D, Budts W, Filos D, Triantafyllidis A, Maglaveras N, Cornelissen VA: PATHway I: design and rationale for the investigation of the feasibility, clinical effectiveness and cost-effectiveness of a technology-enabled cardiac rehabilitation platform. BMJ Open. 2017 Jun 30;7(6):e016781. PubMed PMID: 28667228. doi: http://dx.doi.org/10.1136/bmjopen-2017-016781
  35. Cheimariotis GA, Chatzizisis YS, Koutkias VG, Toutouzas K, Giannopoulos A, Riga M, Chouvarda I, Antoniadis AP, Doulaverakis C, Tsamboulatidis I, Kompatsiaris I, Giannoglou GD, Maglaveras N: ARCOCT: Automatic detection of lumen border in intravascular OCT images. Comput Methods Programs Biomed. 2017 Nov;151:21-32. Epub 2017 Aug 16. PubMed PMID: 28947003. doi: http://dx.doi.org/10.1016/j.cmpb.2017.08.007
  36. Natsiavas P, Maglaveras N, Koutkias V: Evaluation of Linked, Open Data Sources for Mining Adverse Drug Reaction Signals. In: I. Kompatsiaris et al. (Eds.), Internet Science (INSCI 2017), Lecture Notes in Computer Science, vol. 10673, pp. 310-328, Springer, 2017, doi: http://dx.doi.org/10.1007/978-3-319-70284-1_24
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  38. Livitckaia K, Koutkias V, Maglaveras N, Kouidi E, van Gils M, Chouvarda I: Overview of Health Behavior Change Interventions to Promote Physical-activity-related Adherence in Patients with Heart Disease. In: H. Eskola, O. Vaisanen, J. Viik, J. Hyttinen (Eds.), IFMBE Proceedings, Vol. 65, 2017, pp. 286-289, Springer, doi:http://dx.doi.org/10.1007/978-981-10-5122-7_72
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  40. Natsiavas P, Kakalou C, Votis K, Tzovaras D, Maglaveras N, Komnios I, Koutkias V: Identification of Barriers and Facilitators for eHealth Acceptance: The KONFIDO Study.In: Maglaveras N et al. (eds), Precision Medicine Powered by pHealth and Connected Health, IFMBE Proceedings, Vol. 66, pp. 81–85, Springer, Singapore, 2017. https://doi.org/10.1007/978-981-10-7419-6_14
  41. Livitckaia K, Koutkias V, Maglaveras N, Kouidi E, van Gils M, Chouvarda I: Adherence to Physical Activity in Patients with Heart Disease: Types, Settings and Evaluation Instruments. In: Maglaveras N et al (eds), Precision Medicine Powered by pHealth and Connected Health, IFMBE Proceedings, Vol. 66, pp. 255-259, Springer, Singapore, 2017. https://doi.org/10.1007/978-981-10-7419-6_42
  42. Triantafyllidis A, Filos D, Buys R, Claes J, Cornelissen V, Kouidi E, Chatzitofis A, Zarpalas D, Daras P, Chouvarda I, Maglaveras N: A Computer-assisted System with Kinect Sensors and Wristband Heart Rate Monitors for Group Classes of Exercise-based Rehabilitation. In: Maglaveras N et al (eds), Precision Medicine Powered by pHealth and Connected Health, IFMBE Proceedings, Vol. 66, pp. 237-241, Springer, Singapore, 2017. https://doi.org/10.1007/978-981-10-7419-6_39
  43. Chytas A, Vaporidi K, Surlatzis Y, Georgopoulos D, Maglaveras N, Chouvarda I: Deep Learning Techniques on sparsely sampled multichannel data – Identify deterioration in ICU patients. In: Maglaveras N et al (eds), Precision Medicine Powered by pHealth and Connected Health, IFMBE Proceedings, Vol. 66, pp. 15-18, Springer, Singapore, 2017. https://doi.org/10.1007/978-981-10-7419-6_3

2016

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  2. Zambounis A, et al.: First report of an arbuscular mycorrhizal fungus Funneliformis mosseae associated with Thuja plicata in an ectomycorrhizal forest in Greece. International Journal of Phytopathology. 2016; 5(1).
  3. Zambounis A, et al.: Identification of Phytophthora Species by a High Resolution Melting Analysis: an Innovative Tool for Rapid Differentiation. Plant Protection Science. 2016; 52(3). doi: http://dx.doi.org/10.17221/179/2015-PPS
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  5. Zambounis A, et al.: Evidence of extensive positive selection acting on cherry (‘Prunus avium’L.) resistance gene analogs (RGAs). Australian Journal of Crop Science. 2016; 10(9):1324. doi: http://dx.doi.org/10.21475/ajcs.2016.10.09.p7825
  6. Voulgari G, et al.: Overexpression of a Glutathione S-Transferase gene from P. vulgaris L. Improves salt stress Tolerance in Transgenic Tobacco Plants. 2016.
  7. Hilioti Z, et al.: A novel arrangement of zinc finger nuclease system for in vivo targeted genome engineering: the tomato LEC1-LIKE4 gene case. Plant Cell Rep. 2016 Nov; 35(11): 2241-2255. Epub 2016 Jul 29. PubMed PMID: 27473525. doi: http://dx.doi.org/10.1007/s00299-016-2031-xhttp://rdcu.be/nlhu
  8. Farmaki T: Use of a Phosphatidylinositol Phosphate Affinity Chromatography (PIP Chromatography) for the Isolation of Proteins Involved in Protein Quality Control and Proteostasis Mechanisms in Plants. Methods Mol Biol. 2016; 1450: 223-32. PubMed PMID: 27424758. doi: http://dx.doi.org/10.1007/978-1-4939-3759-2_18
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  1. Chatzistamatiou K, Moysiadis T, Moschaki V, Panteleris N, Agorastos T: Comparison of cytology, HPV DNA testing and HPV 16/18 genotyping alone or combined targeting to the more balanced methodology for cervical cancer screening. Gynecol Oncol. 2016 Jul;142(1):120-7. Epub 2016 May 8. PubMed PMID: 27126005. doi: http://dx.doi.org/10.1016/j.ygyno.2016.04.027
  2. Mansouri L, Noerenberg D, Young E, Mylonas E, Abdulla M, Frick M, Asmar F, Ljungström V, Schneider M, Yoshida K, Skaftason A, Pandzic T, Gonzalez B, Tasidou A, Waldhueter N, Rivas-Delgado A, Angelopoulou M, Ziepert M, Arends CM, Couronné L, Lenze D, Baldus CD, Bastard C, Okosun J, Fitzgibbon J, Dörken B, Drexler HG, Roos-Weil D, Schmitt CA, Munch-Petersen HD, Zenz T, Hansmann ML, Strefford JC, Enblad G, Bernard OA, Ralfkiaer E, Erlanson M, Korkolopoulou P, Hultdin M, Papadaki T, Grønbæk K, Lopez-Guillermo A, Ogawa S, Küppers R, Stamatopoulos K, Stavroyianni N, Kanellis G, Rosenwald A, Campo E, Amini RM, Ott G, Vassilakopoulos TP, Hummel M, Rosenquist R, Damm F: Frequent NFKBIE deletions are associated with poor outcome in primary mediastinal B-cell lymphoma. 2016 Dec 8;128(23):2666-2670. Epub 2016 Sep 26. PubMed PMID: 27670424. doi: http://dx.doi.org/10.1182/blood-2016-03-704528
  3. Blanco G, Puiggros A, Baliakas P, Athanasiadou A, García-Malo M, Collado R, Xochelli A, Rodríguez-Rivera M, Ortega M, Calasanz MJ, Luño E, Vargas M, Grau J, Martínez-Laperche C, Valiente A, Cervera J, Anagnostopoulos A, Gimeno E, Abella E, Stalika E, Hernández-Rivas JM, Ortuño FJ, Robles D, Ferrer A, Ivars D, González M, Bosch F, Abrisqueta P, Stamatopoulos K, Espinet B: Karyotypic complexity rather than chromosome 8 abnormalities aggravates the outcome of chronic lymphocytic leukemia patients with TP53 aberrations. 2016 Dec 6;7(49):80916-80924. PubMed PMID: 27821812. doi: http://dx.doi.org/10.18632/oncotarget.13106
  4. Rosenquist R, Rosenwald A, Du MQ, Gaidano G, Groenen P, Wotherspoon A, Ghia P, Gaulard P, Campo E, Stamatopoulos K: European Research Initiative on CLL (ERIC) and the European Association for Haematopathology (EAHP). Clinical impact of recurrently mutated genes on lymphoma diagnostics: state-of-the-art and beyond. 2016 Sep;101(9):1002-9. Review. PubMed PMID: 27582569. doi: http://dx.doi.org/10.3324/haematol.2015.134510
  5. Rosenquist R, Stamatopoulos K: B-cell malignancies: All roads lead to NF-κB activation. Semin Cancer Biol. 2016 Aug;39:1-2. Epub 2016 Aug 18. PubMed PMID: 27546288. doi: http://dx.doi.org/10.1016/j.semcancer.2016.08.003
  6. Mansouri L, Papakonstantinou N, Ntoufa S, Stamatopoulos K, Rosenquist R: NF-κB activation in chronic lymphocytic leukemia: A point of convergence of external triggers and intrinsic lesions. Semin Cancer Biol. 2016 Aug;39:40-8. Epub 2016 Aug 1. Review. PubMed PMID: 27491692. doi: http://dx.doi.org/10.1016/j.semcancer.2016.07.005
  7. Navrkalova V, Young E, Baliakas P, Radova L, Sutton LA, Plevova K, Mansouri L, Ljungström V, Ntoufa S, Davis Z, Juliusson G, Smedby KE, Belessi C, Panagiotidis P, Touloumenidou T, Davi F, Langerak AW, Ghia P, Strefford JC, Oscier D, Mayer J, Stamatopoulos K, Pospisilova S, Rosenquist R, Trbusek M: ATM mutations in major stereotyped subsets of chronic lymphocytic leukemia: enrichment in subset #2 is associated with markedly short telomeres. 2016 Sep;101(9):e369-73. Epub 2016 Jun 16. PubMed PMID: 27479817. doi: http://dx.doi.org/10.3324/haematol.2016.142968
  8. Ntoufa S, Vilia MG, Stamatopoulos K, Ghia P, Muzio M: Toll-like receptors signaling: A complex network for NF-κB activation in B-cell lymphoid malignancies. Semin Cancer Biol. 2016 Aug;39:15-25. Epub 2016 Jul 9. Review. PubMed PMID: 27402288. doi: http://dx.doi.org/10.1016/j.semcancer.2016.07.001
  9. Kavakiotis I, Xochelli A, Agathangelidis A, Tsoumakas G, Maglaveras N, Stamatopoulos K, Hadzidimitriou A, Vlahavas I, Chouvarda I: Integrating multiple immunogenetic data sources for feature extraction and mining somatic hypermutation patterns: the case of “towards analysis” in chronic lymphocytic leukaemia. BMC Bioinformatics. 2016 Jun 6;17 Suppl 5:173. PubMed PMID: 27295298. doi: http://dx.doi.org/10.1186/s12859-016-1044-3
  10. Sutton LA, Young E, Baliakas P, Hadzidimitriou A, Moysiadis T, Plevova K, Rossi D, Kminkova J, Stalika E, Pedersen LB, Malcikova J, Agathangelidis A, Davis Z, Mansouri L, Scarfò L, Boudjoghra M, Navarro A, Muggen AF, Yan XJ, Nguyen-Khac F, Larrayoz M, Panagiotidis P, Chiorazzi N, Niemann CU, Belessi C, Campo E, Strefford JC, Langerak AW, Oscier D, Gaidano G, Pospisilova S, Davi F, Ghia P, Stamatopoulos K, Rosenquist R; ERIC, the European Research Initiative on CLL: Different spectra of recurrent gene mutations in subsets of chronic lymphocytic leukemia harboring stereotyped B-cell receptors. 2016 Aug;101(8):959-67. Epub 2016 May 19. PubMed PMID: 27198719. doi: http://dx.doi.org/10.3324/haematol.2016.141812
  11. Papakonstantinou N, Ntoufa S, Chartomatsidou E, Kotta K, Agathangelidis A, Giassafaki L, Karamanli T, Bele P, Moysiadis T, Baliakas P, Sutton LA, Stavroyianni N, Anagnostopoulos A, Makris AM, Ghia P, Rosenquist R, Stamatopoulos K: The histone methyltransferase EZH2 as a novel prosurvival factor in clinically aggressive chronic lymphocytic leukemia. 2016 Jun 14;7(24):35946-35959. PubMed PMID: 27191993. doi: http://dx.doi.org/10.18632/oncotarget.9371
  12. Baliakas P, Puiggros A, Xochelli A, Sutton LA, Nguyen-Khac F, Gardiner A, Plevova K, Minga E, Hadzidimitriou A, Walewska R, McCarthy H, Ortega M, Collado R, González T, Granada I, Luño E, Kotašková J, Moysiadis T, Davis Z, Stavroyianni N, Anagnostopoulos A, Strefford JC, Pospisilova S, Davi F, Athanasiadou A, Rosenquist R, Oscier D, Espinet B, Stamatopoulos K: Additional trisomies amongst patients with chronic lymphocytic leukemia carrying trisomy 12: the accompanying chromosome makes a difference.2016 Jul;101(7):e299-302. Epub 2016 Apr 21. PubMed PMID: 27102498. doi: http://dx.doi.org/10.3324/haematol.2015.140202
  13. Ntoufa S, Papakonstantinou N, Apollonio B, Gounari M, Galigalidou C, Fonte E, Anagnostopoulos A, Belessi C, Muzio M, Ghia P, Stamatopoulos K: B Cell Anergy Modulated by TLR1/2 and the miR-17∼92 Cluster Underlies the Indolent Clinical Course of Chronic Lymphocytic Leukemia Stereotyped Subset #4. J Immunol. 2016 May 15;196(10):4410-7. Epub 2016 Apr 8. PubMed PMID: 27059597. doi: http://dx.doi.org/10.4049/jimmunol.1502297
  14. Pospisilova S, Sutton LA, Malcikova J, Tausch E, Rossi D, Montserrat E, Moreno C, Stamatopoulos K, Gaidano G, Rosenquist R, Ghia P; European Research Initiative on CLL (ERIC): Innovation in the prognostication of chronic lymphocytic leukemia: how far beyond TP53 gene analysis can we go? 2016 Mar;101(3):263-5. PubMed PMID: 26928246. doi: http://dx.doi.org/10.3324/haematol.2015.139246
  15. Engert A, Balduini C, Brand A, Coiffier B, Cordonnier C, Döhner H, de Wit TD, Eichinger S, Fibbe W, Green T, de Haas F, Iolascon A, Jaffredo T, Rodeghiero F, Salles G, Schuringa JJ; EHA Roadmap for European Hematology Research: The European Hematology Association Roadmap for European Hematology Research: a consensus document.2016 Feb;101(2):115-208. Epub 2016 Jan 27. PubMed PMID: 26819058. doi: http://dx.doi.org/10.3324/haematol.2015.136739
  16. Baliakas P, Mattsson M, Stamatopoulos K, Rosenquist R: Prognostic indices in chronic lymphocytic leukaemia: where do we stand how do we proceed? J Intern Med. 2016 Apr;279(4):347-57. Epub 2015 Dec 28. Review. PubMed PMID: 26709197. doi: http://dx.doi.org/10.1111/joim.12455
  17. Ljungström V, Cortese D, Young E, Pandzic T, Mansouri L, Plevova K, Ntoufa S, Baliakas P, Clifford R, Sutton LA, Blakemore SJ, Stavroyianni N, Agathangelidis A, Rossi D, Höglund M, Kotaskova J, Juliusson G, Belessi C, Chiorazzi N, Panagiotidis P, Langerak AW, Smedby KE, Oscier D, Gaidano G, Schuh A, Davi F, Pott C, Strefford JC, Trentin L, Pospisilova S, Ghia P, Stamatopoulos K, Sjöblom T, Rosenquist R: Whole-exome sequencing in relapsing chronic lymphocytic leukemia: clinical impact of recurrent RPS15 mutations. 2016 Feb 25;127(8):1007-16. Epub 2015 Dec 16. PubMed PMID: 26675346. doi: http://dx.doi.org/10.1182/blood-2015-10-674572
  18. Bikos V, Karypidou M, Stalika E, Baliakas P, Xochelli A, Sutton LA, Papadopoulos G, Agathangelidis A, Papadopoulou E, Davis Z, Algara P, Kanellis G, Traverse-Glehen A, Mollejo M, Anagnostopoulos A, Ponzoni M, Gonzalez D, Pospisilova S, Matutes E, Piris MA, Papadaki T, Ghia P, Rosenquist R, Oscier D, Darzentas N, Tzovaras D, Belessi C, Hadzidimitriou A, Stamatopoulos K: An Immunogenetic Signature of Ongoing Antigen Interactions in Splenic Marginal Zone Lymphoma Expressing IGHV1-2*04 Receptors. Clin Cancer Res. 2016 Apr 15;22(8):2032-40. Epub 2015 Dec 8. PubMed PMID: 26647217. doi: http://dx.doi.org/10.1158/1078-0432.CCR-15-1170
  19. Parker H, Rose-Zerilli MJ, Larrayoz M, Clifford R, Edelmann J, Blakemore S, Gibson J, Wang J, Ljungström V, Wojdacz TK, Chaplin T, Roghanian A, Davis Z, Parker A, Tausch E, Ntoufa S, Ramos S, Robbe P, Alsolami R, Steele AJ, Packham G, Rodríguez-Vicente AE, Brown L, McNicholl F, Forconi F, Pettitt A, Hillmen P, Dyer M, Cragg MS, Chelala C, Oakes CC, Rosenquist R, Stamatopoulos K, Stilgenbauer S, Knight S, Schuh A, Oscier DG, Strefford JC. Genomic disruption of the histone methyltransferase SETD2 in chronic lymphocytic leukaemia. 2016 Nov;30(11):2179-2186. Epub 2016 May 20. PubMed PMID: 27282254. doi: http://dx.doi.org/10.1038/leu.2016.134
  20. Vardi A, Agathangelidis A, Stalika E, Karypidou M, Siorenta A, Anagnostopoulos A, Rosenquist R, Hadzidimitriou A, Ghia P, Sutton LA, Stamatopoulos K: Antigen Selection Shapes the T-cell Repertoire in Chronic Lymphocytic Leukemia. Clin Cancer Res. 2016 Jan 1;22(1):167-74. Epub 2015 Sep 2. PubMed PMID: 26338994. doi: http://dx.doi.org/10.1158/1078-0432.CCR-14-3017
  21. Petrakis S, Andrade-Navarro MA; Editorial: Protein Interaction Networks in Health and Disease. Front Genet. 2016 Jun 14;7:111. PubMed PMID: 27379161. doi: http://dx.doi.org/10.3389/fgene.2016.00111
  22. Chouvarda IG, Babalis D, Papaioannou V, Maglaveras N, Georgopoulos D: Multiparametric modeling of the ineffective efforts in assisted ventilation within an ICU. Med Biol Eng Comput. 2016 Mar;54(2-3):441-51. Epub 2015 Jun 17. PubMed PMID: 26081905. doi: http://dx.doi.org/10.1007/s11517-015-1328-1
  23. Natsiavas P, Maglaveras N, Koutkias V: A Public Health Surveillance Platform Exploiting Free-text Sources via Natural Language Processing and Linked Data: Application in Adverse Drug Reaction Signal Detection using PubMed and Twitter. In: Riano D., Lenz R., Reichert M. (Eds.), Knowledge Representation for Health Care. KR4HC 2016, ProHealth 2016. Lecture Notes in Computer Science, vol. 10096, pp. 51-67, Springer, 2017, doi: http://dx.doi.org/10.1007/978-3-319-55014-5_4
  24. Doulaverakis C, Koutkias V, Antoniou G, Kompatsiaris I: Modelling and execution of clinical practice guidelines using ontologies and SPARQL-based inference. In: Riano D., Lenz R., Reichert M. (Eds.), Knowledge Representation for Health Care. KR4HC 2016, ProHealth 2016. Lecture Notes in Computer Science, vol. 10096, pp. 90-108, Springer, 2017, doi: http://dx.doi.org/10.1007/978-3-319-55014-5_6
  25. Koutkias V, Bouaud J: Computerized Clinical Decision Support: Contributions from 2015. Yearb Med Inform. 2016 Nov 10;(1):170-177. PubMed PMID: 27830247. doi: http://dx.doi.org/10.15265/IY-2016-055
  26. Triantafyllidis AK, Koutkias VG, Chouvarda I, Adami I, Kouroubali A, Maglaveras N: Framework of sensor-based monitoring for pervasive patient care. Healthc Technol Lett. 2016 Aug 12;3(3):153-158. eCollection 2016 Sep. PubMed PMID: 27733920. doi: http://dx.doi.org/10.1049/htl.2016.0017
  27. Maglaveras N, Kilintzis V, Koutkias V, Chouvarda I: Integrated Care and Connected Health Approaches Leveraging Personalised Health through Big Data Analytics. Stud Health Technol Inform. 2016;224:117-22. PubMed PMID: 27225565
  28. Koutkias V, Kaklanis N, Votis K, Tzovaras D, Maglaveras N: An integrated semantic framework supporting universal accessibility to ICT. (March 2016) Universal Access in the Information Society, 15 (1), pp. 49-62. doi: http://dx.doi.org/10.1007/s10209-014-0372-1
  29. Natsiavas P, Koutkias V, Maglaveras N: A Platform Exploiting Free-text Sources for Public Health Surveillance through Natural Language Processing and Linked Data Technologies: Application in Adverse Drug Reaction Signal Detection. of 8th Int. Workshop on Knowledge Representation for Health Care (KR4HC’16), Sept. 2, 2016, Munich, Germany, pp. 42-55.
  30. Filos D, Triantafyllidis A, Chouvarda I, Buys R, Cornelissen V, Budts W, Walsh D, Woods C, Moran K, Maglaveras N: PATHway: Decision Support in Exercise Programmes for Cardiac Rehabilitation. Stud Health Technol Inform. 2016;224:40-5. PubMed PMID: 27225551. doi: http://dx.doi.org/10.3233/978-1-61499-653-8-40

2015

  1. Zambounis A, Xanthopoulou A, Madesis P, Tsaftaris A, Vannini A, Bruni N, Tomassini A, Chilosi G, Vettraino A: Of Phytophthora Cambivora Isolates. Journal of Plant Pathology 2016, 98(3):611-616.
  2. Zambounis A, Xanthopoulou A, Karaoglanidis G, Tsaftaris A, Madesis P: A new accurate genotyping HRM method for Alternaria species related to fruit rot diseases of apple and pomegranate. International Journal of Phytopathology 2016, 4(3):159-165.
  3. Zambounis A, Xanthopoulou A, Aravanopoulos FA, Tsaftaris B, Madesis P, Barbas E: First report of an arbuscular mycorrhizal fungus Funneliformis mosseae associated with Thuja plicata in an ectomycorrhizal forest in Greece. International Journal of Phytopathology 2016, 5(1).
  4. Zambounis A, Samaras A, Xanthopoulou A, Osathanunkul M, Schena L, Tsaftaris A, Madesis P: Identification of Phytophthora Species by a High Resolution Melting Analysis: an Innovative Tool for Rapid Differentiation. Plant Protection Science 2016, 52(3). doi: http://dx.doi.org/10.17221/179/2015-PPS
  5. Zambounis A, Psomopoulos FE, Ganopoulos I, Avramidou E, Aravanopoulos FA, Tsaftaris A, Madesis P: ‘In silico’analysis of the LRR receptor-like serine threonine kinases subfamily in’Morus notabilis’. Plant Omics 2016, 9(5):319. doi: http://dx.doi.org/10.21475/poj.09.05.16.pne126
  6. Zambounis A, Ganopoulos I, Avramidou E, Aravanopoulos FA, Tsaftaris A, Madesis P: Evidence of extensive positive selection acting on cherry (‘Prunus avium’L.) resistance gene analogs (RGAs). Australian Journal of Crop Science 2016, 10(9):1324. doi: http://dx.doi.org/10.21475/ajcs.2016.10.09.p7825
  7. Voulgari G, Madesis P, Lambrou N, Nianiou–Obeidat I: Overexpression of a Glutathione S-Transferase gene from P. vulgaris L. Improves salt stress Tolerance in Transgenic Tobacco Plants. 2016.
  8. Hilioti Z, Ganopoulos I, Ajith S, Bossis I, Tsaftaris A: A novel arrangement of zinc finger nuclease system for in vivo targeted genome engineering: the tomato LEC1-LIKE4 gene case. Plant Cell Rep. 2016 Nov;35(11):2241-2255. Epub 2016 Jul 29. PubMed PMID: 27473525. doi: http://dx.doi.org/10.1007/s00299-016-2031-xhttp://rdcu.be/nlhu
  9. Farmaki T: Use of a Phosphatidylinositol Phosphate Affinity Chromatography (PIP Chromatography) for the Isolation of Proteins Involved in Protein Quality Control and Proteostasis Mechanisms in Plants. Methods Mol Biol. 2016;1450:223-32. PubMed PMID: 27424758. doi: http://dx.doi.org/10.1007/978-1-4939-3759-2_18
  10. Merkouropoulos G, Kapazoglou A, Drosou V, Jacobs E, Krolzig A, Papadopoulos C, Hilioti Z: Dwarf hybrids of the bioenergy crop Ricinus communis suitable for mechanized harvesting reveal differences in morpho-physiological characteristics and seed metabolic profiles. Euphytica 2016; 1-13.doi: http://dx.doi.org/10.1007/s10681-016- 1702-6
  11. Ignea C, Ioannou E, Georgantea P, Trikka FA, Athanasakoglou A, Loupassaki S, Roussis V, Makris AM, Kampranis SC: Production of the forskolin precursor 11β-hydroxy-manoyl oxide in yeast using surrogate enzymatic activities. Microb Cell Fact. 2016 Feb 26;15:46. PubMed PMID: 26920948. doi: http://dx.doi.org/10.1186/s12934-016-0440-8
  12. Xanthopoulou A, Psomopoulos F, Ganopoulos I, Manioudaki M, Tsaftaris A, Nianiou-Obeidat I, Madesis P: De novo transcriptome assembly of two contrasting pumpkin cultivars. Genom Data. 2016 Jan 15;7:200-1. eCollection 2016 Mar. PubMed PMID: 26981408. doi: http://dx.doi.org/10.1016/j.gdata.2016.01.006
  13. Xanthopoulou A, Ganopoulos I, Kalivas A, Osathanunkul M, Chatzopoulou P, Tsaftaris A, Madesis P: Multiplex HRM analysis as a tool for rapid molecular authentication of nine herbal teas. Food Control 2016, 60:113-116. doi: http://dx.doi.org/10.1016/j.foodcont.2015.07.021
  14. Osathanunkul M, Suwannapoom C, Osathanunkul K, Madesis P, de Boer H: Evaluation of DNA barcoding coupled high resolution melting for discrimination of closely related species in phytopharmaceuticals. Phytomedicine. 2016 Feb 15;23(2):156-65. Epub 2016 Jan 6. PubMed PMID: 26926177. doi: http://dx.doi.org/10.1016/j.phymed.2015.11.018
  15. Krommydas KS, Tzikalios Z, Madesis P, Bletsos FA, Mavromatis A, Roupakias DG: Development and Fertility Restoration of CMS Eggplant Lines Carrying the Cytoplasm of Solanum violaceum. Journal of Agricultural Science 2016, 8(2):10. doi: http://dx.doi.org/10.5539/jas.v8n2p10
  16. Ignea C, Athanasakoglou A, Ioannou E, Georgantea P, Trikka FA, Loupassaki S, Roussis V, Makris AM, Kampranis SC: Carnosic acid biosynthesis elucidated by a synthetic biology platform. Proc Natl Acad Sci U S A. 2016 Mar 29;113(13):3681-6. Epub 2016 Mar 14. PubMed PMID: 26976595. doi: http://dx.doi.org/10.1073/pnas.1523787113.
  17. Ioannidi E, Rigas S, Tsitsekian D, Daras G, Alatzas A, Makris A, Tanou G, Argiriou A, Alexandrou D, Poethig S, Hatzopoulos P, Kanellis AK: Trichome patterning control involves TTG1 interaction with SPL transcription factors. Plant Mol Biol. 2016 Dec;92(6):675-687. Epub 2016 Sep 8. PubMed PMID: 27631431.
  18. Chatzidimopoulos M, Psomopoulos F, Malandrakis EE, Ganopoulos I, Madesis P, Vellios EK, Drogoudi P: Comparative Genomics of Botrytis cinerea Strains with Differential Multi-Drug Resistance. Front Plant Sci. 2016 Apr 28;7:554. eCollection 2016. PubMed PMID: 27200028. doi: http://dx.doi.org/10.3389/fpls.2016.00554
  19. Osathanunkul M, Suwannapoom C, Khamyong N, Pintakum D, Lamphun SN, Triwitayakorn K, Osathanunkul K, Madesis P: Hybrid analysis (barcode-high resolution melting) for authentication of Thai herbal products, Andrographis paniculata (Burm.f.) Wall.ex Nees. Pharmacogn Mag. 2016 Jan;12(Suppl 1):S71-5. PubMed PMID: 27041863. doi: http://dx.doi.org/10.4103/0973-1296.176112
  20. Osathanunkul M, Madesis P, Ounjai S, Pumiputavon K, Somboonchai R, Lithanatudom P, Chaowasku T, Wipasa J, Suwannapoom C: Identification of Uvaria sp by barcoding coupled with high-resolution melting analysis (Bar-HRM). Genet Mol Res. 2016 Jan 13;15(1). PubMed PMID: 26909907. doi: http://dx.doi.org/10.4238/gmr.15017405
  21. Ntoanidou S, Madesis P, Diamantidis G, Eleftherohorinos I: Trp574 substitution in the acetolactate synthase of Sinapis arvensis confers cross-resistance to tribenuron and imazamox. Pesticide Biochemistry and Physiology 2016. doi: http://dx.doi.org/10.1016/j.pestbp.2016.12.008
  22. Kissoudis C, Voulgari G, Flemetakis E, Labrou NE, Tsaftaris A, Madesis P, Nianiou-Obeidat I: Morphological, Physiological and Metabolomic Response of transgenic tobacco plants (N. tabacum L.) overexpressing GmGSTU4 under Drought Stress. 2016.
  23. Kissoudis C, Benekos K, Voulgari G, Labrou NE, Madesis P, Nianiou-Obeidat I: Over-expression of a specific soybean GmGSTU4 isoenzyme improves chloroacetanilide herbicide tolerance of transgenic tobacco plants. 2016.
  24. Kalivas A, Ganopoulos I, Bosmali I, Tsaliki E, Osathanunkul M, Xanthopoulou A, Moysiadis T, Avramidou E, Grigoriadis I, Zambounis A: Genetic Diversity and Structure of Tobacco in Greece on the Basis of Morphological and Microsatellite Markers. Crop Science 2016, 56(5):2652-2662.
  25. Papavasileiou A, Madesis PB, Karaoglanidis G: Identification and Differentiation of Monilinia Species Causing Brown Rot of Pome and Stone Fruit using High-Resolution Melting (HRM) Analysis. Phytopathology. 2016 Sep;106(9):1055-64. Epub 2016 Jul 26. PubMed PMID: 27247082. doi: http://dx.doi.org/10.1094/PHYTO-01-16-0016-R
  26. Samaras A, Madesis P, Karaoglanidis GS: Detection of sdhB Gene Mutations in SDHI- Resistant Isolates of Botrytis cinerea Using High Resolution Melting (HRM) Analysis. Front Microbiol. 2016 Nov 15;7:1815. eCollection 2016. PubMed PMID: 27895633.
  27. Zambounis A, Ganopoulos I, Kalivas A, Tsaftaris A, Madesis P: Identification and evidence of positive selection upon resistance gene analogs in cotton (Gossypium hirsutum L.). Physiol Mol Biol Plants. 2016 Jul;22(3):415-421. Epub 2016 Jul 13. PubMed PMID: 27729728.
  28. Ganopoulos I, Moysiadis T, Xanthopoulou A, Osathanunkul M, Madesis P, Zambounis A, Avramidou E, Aravanopoulos FA, Tsaftaris A, Sotiropoulos T: Morpho-physiological diversity in the collection of sour cherry (Prunus cerasus) cultivars of the Fruit Genebank in Naoussa, Greece using multivariate analysis. Scientia Horticulturae 2016, 207:225-232. doi: http://dx.doi.org/10.1016/j.scienta.2016.05.018
  29. Chronopoulou E, Asimakopoulou B, Platis D, Voulgari G, Tsaftaris A, Labrou NE, Nianiou-Obeidat I, Madesis P: Isolation of GST isoenzymes from Phaseolus vulgaris L. and characterization of detoxifying mechanism under biotic and abiotic stress. 2016.
  1. Fonte E, Agathangelidis A, Reverberi D, Ntoufa S, Scarfò L, Ranghetti P, Cutrona G, Tedeschi A, Xochelli A, Caligaris-Cappio F, Ponzoni M, Belessi C, Davis Z, Piris MA, Oscier D, Ghia P, Stamatopoulos K, Muzio M: Toll-like receptor stimulation in splenic marginal zone lymphoma can modulate cell signaling, activation and proliferation. 2015 Nov;100(11):1460-8. Epub 2015 Aug 20. PubMed PMID: 26294727. doi: http://dx.doi.org/10.3324/haematol.2014.119933
  2. Baliakas P, Hadzidimitriou A, Agathangelidis A, Rossi D, Sutton LA, Kminkova J, Scarfo L, Pospisilova S, Gaidano G, Stamatopoulos K, Ghia P, Rosenquist R: Prognostic relevance of MYD88 mutations in CLL: the jury is still out. 2015 Aug 20;126(8):1043-4. PubMed PMID: 26294719. doi: http://dx.doi.org/10.1182/blood- 2015-05-648634
  3. Bystry V, Agathangelidis A, Bikos V, Sutton LA, Baliakas P, Hadzidimitriou A, Stamatopoulos K, Darzentas N; European Research Initiative on CLL: ARResT/AssignSubsets: a novel application for robust subclassification of chronic lymphocytic leukemia based on B cell receptor IG stereotypy. 2015 Dec 1;31(23):3844-6. Epub 2015 Aug 6. PubMed PMID: 26249808. doi: http://dx.doi.org/10.1093/bioinformatics/btv456
  4. Puente XS, Beà S, Valdés-Mas R, Villamor N, Gutiérrez-Abril J, Martín-Subero JI, Munar M, Rubio-Pérez C, Jares P, Aymerich M, Baumann T, Beekman R, Belver L, Carrio A, Castellano G, Clot G, Colado E, Colomer D, Costa D, Delgado J, Enjuanes A, Estivill X, Ferrando AA, Gelpí JL, González B, González S, González M, Gut M, Hernández-Rivas JM, López-Guerra M, Martín-García D, Navarro A, Nicolás P, Orozco M, Payer ÁR, Pinyol M, Pisano DG, Puente DA, Queirós AC, Quesada V, Romeo-Casabona CM, Royo C, Royo R, Rozman M, Russiñol N, Salaverría I, Stamatopoulos K, Stunnenberg HG, Tamborero D, Terol MJ, Valencia A, López-Bigas N, Torrents D, Gut I, López-Guillermo A, López-Otín C, Campo E: Non-coding recurrent mutations in chronic lymphocytic leukaemia. 2015 Oct 22;526(7574):519-24. Epub 2015 Jul 22. PubMed PMID: 26200345. doi: http://dx.doi.org/10.1038/nature14666
  5. Mansouri L, Sutton LA, Ljungström V, Bondza S, Arngården L, Bhoi S, Larsson J, Cortese D, Kalushkova A, Plevova K, Young E, Gunnarsson R, Falk-Sörqvist E, Lönn P, Muggen AF, Yan XJ, Sander B, Enblad G, Smedby KE, Juliusson G, Belessi C, Rung J, Chiorazzi N, Strefford JC, Langerak AW, Pospisilova S, Davi F, Hellström M, Jernberg-Wiklund H, Ghia P, Söderberg O, Stamatopoulos K, Nilsson M, Rosenquist R: Functional loss of IκBε leads to NF-κB deregulation in aggressive chronic lymphocytic leukemia. J Exp Med. 2015 Jun 1;212(6):833-43. Epub 2015 May 18. PubMed PMID: 25987724. doi: http://dx.doi.org/10.1084/jem.20142009
  6. Gounari M, Ntoufa S, Apollonio B, Papakonstantinou N, Ponzoni M, Chu CC, Rossi D, Gaidano G, Chiorazzi N, Stamatopoulos K, Ghia P: Excessive antigen reactivity may underlie the clinical aggressiveness of chronic lymphocytic leukemia stereotyped subset #8. 2015 Jun 4;125(23):3580-7. Epub 2015 Apr 21. PubMed PMID: 25900981. doi: http://dx.doi.org/10.1182/blood-2014-09-603217
  7. Xochelli A, Sutton LA, Agathangelidis A, Stalika E, Karypidou M, Marantidou F, Lopez AN, Papadopoulos G, Supikova J, Groenen P, Boudjogra M, Sundstrom C, Ponzoni M, Francova HS, Anagnostopoulos A, Pospisilova S, Papadaki T, Tzovaras D, Ghia P, Pott C, Davi F, Campo E, Rosenquist R, Hadzidimitriou A, Belessi C, Stamatopoulos K: Molecular evidence for antigen drive in the natural history of mantle cell lymphoma. Am J Pathol. 2015 Jun;185(6):1740-8. Epub 2015 Apr 2. PubMed PMID: 25843681. doi: http://dx.doi.org/10.1016/j.ajpath.2015.02.006
  8. Parry M, Rose-Zerilli MJ, Ljungström V, Gibson J, Wang J, Walewska R, Parker H, Parker A, Davis Z, Gardiner A, McIver-Brown N, Kalpadakis C, Xochelli A,Anagnostopoulos A, Fazi C, de Castro DG, Dearden C, Pratt G, Rosenquist R, Ashton-Key M, Forconi F, Collins A, Ghia P, Matutes E, Pangalis G, Stamatopoulos K, Oscier D, Strefford JC: Genetics and Prognostication in Splenic Marginal Zone Lymphoma: Revelations from Deep Sequencing. Clin Cancer Res. 2015 Sep 15;21(18):4174-4183. Epub 2015 Mar 16. PubMed PMID: 25779943. doi: http://dx.doi.org/10.1158/1078-0432.CCR-14-2759
  9. Moreno C, Montillo M, Panayiotidis P, Dimou M, Bloor A, Dupuis J, Schuh A, Norin S, Geisler C, Hillmen P, Doubek M, Trněný M, Obrtlikova P, Laurenti L, Stilgenbauer S, Smolej L, Ghia P, Cymbalista F, Jaeger U, Stamatopoulos K, Stavroyianni N, Carrington P, Zouabi H, Leblond V, Gomez-Garcia JC, Rubio M, Marasca R, Musuraca G, Rigacci L, Farina L, Paolini R, Pospisilova S, Kimby E, Bradley C, Montserrat E: Ofatumumab in poor-prognosis chronic lymphocytic leukemia: a phase IV, non-interventional, observational study from the European Research Initiative on Chronic Lymphocytic Leukemia. 2015 Apr;100(4):511-6. Epub 2015 Jan 16. PubMed PMID: 25596264. doi: http://dx.doi.org/10.3324/haematol.2014.118158
  10. Sutton LA, Papadopoulos G, Hadzidimitriou A, Papadopoulos S, Kostareli E, Rosenquist R, Tzovaras D, Stamatopoulos K: An entity evolving into a community: defining the common ancestor and evolutionary trajectory of chronic lymphocytic leukemia stereotyped subset #4. Mol Med. 2015 Apr 2;20:720-8. PubMed PMID: 25486132. doi: http://dx.doi.org/10.2119/molmed.2014.00140
  11. Baliakas P, Agathangelidis A, Hadzidimitriou A, Sutton LA, Minga E, Tsanousa A, Scarfò L, Davis Z, Yan XJ, Shanafelt T, Plevova K, Sandberg Y, Vojdeman FJ, Boudjogra M, Tzenou T, Chatzouli M, Chu CC, Veronese S, Gardiner A, Mansouri L, Smedby KE, Pedersen LB, Moreno D, Van Lom K, Giudicelli V, Francova HS, Nguyen-Khac F, Panagiotidis P, Juliusson G, Angelis L, Anagnostopoulos A, Lefranc MP, Facco M, Trentin L, Catherwood M, Montillo M, Geisler CH, Langerak AW, Pospisilova S, Chiorazzi N, Oscier D, Jelinek DF, Darzentas N, Belessi C, Davi F, Ghia P, Rosenquist R, Stamatopoulos K: Not all IGHV3-21 chronic lymphocytic leukemias are equal: prognostic considerations. 2015 Jan 29;125(5):856-9. Epub 2014 Dec 17. PubMed PMID: 25634617. doi: http://dx.doi.org/10.1182/blood-2014-09-600874
  12. Sutton LA, Ljungström V, Mansouri L, Young E, Cortese D, Navrkalova V, Malcikova J, Muggen AF, Trbusek M, Panagiotidis P, Davi F, Belessi C, Langerak AW, Ghia P, Pospisilova S, Stamatopoulos K, Rosenquist R: Targeted next-generation sequencing in chronic lymphocytic leukemia: a high-throughput yet tailored approach will facilitate implementation in a clinical setting. 2015 Mar;100(3):370-6. Epub 2014 Dec 5. PubMed PMID: 25480502. doi: http://dx.doi.org/10.3324/haematol.2014.109777
  13. Xochelli A, Agathangelidis A, Kavakiotis I, Minga E, Sutton LA, Baliakas P, Chouvarda I, Giudicelli V, Vlahavas I, Maglaveras N, Bonello L, Trentin L, Tedeschi A, Panagiotidis P, Geisler C, Langerak AW, Pospisilova S, Jelinek DF, Oscier D, Chiorazzi N, Darzentas N, Davi F, Ghia P, Rosenquist R, Hadzidimitriou A, Belessi C, Lefranc MP, Stamatopoulos K: Immunoglobulin heavy variable (IGHV) genes and alleles: new entities, new names and implications for research and prognostication in chronic lymphocytic leukaemia. 2015 Jan;67(1):61-6. Epub 2014 Nov 12. PubMed PMID: 25388851. doi: http://dx.doi.org/10.1007/s00251-014-0812-3
  14. Baliakas P, Hadzidimitriou A, Sutton LA, Rossi D, Minga E, Villamor N, Larrayoz M, Kminkova J, Agathangelidis A, Davis Z, Tausch E, Stalika E, Kantorova B, Mansouri L, Scarfò L, Cortese D, Navrkalova V, Rose-Zerilli MJ, Smedby KE, Juliusson G, Anagnostopoulos A, Makris AM, Navarro A, Delgado J, Oscier D, Belessi C, Stilgenbauer S, Ghia P, Pospisilova S, Gaidano G, Campo E, Strefford JC, Stamatopoulos K, Rosenquist R; European Research Initiative on CLL (ERIC): Recurrent mutations refine prognosis in chronic lymphocytic leukemia. 2015 Feb;29(2):329-36. Epub 2014 Jun 19. PubMed PMID: 24943832. doi: http://dx.doi.org/10.1038/leu.2014.196
  15. Baliakas P, Strefford JC, Bikos V, Parry M, Stamatopoulos K, Oscier D: Splenic marginal-zone lymphoma: ontogeny and genetics. Leuk Lymphoma. 2015 Feb;56(2):301-10. Epub 2014 Aug 19. Review. PubMed PMID: 24798744. doi: http://dx.doi.org/10.3109/10428194.2014.919636
  16. Chouvarda IG, Goulis DG, Lambrinoudaki I, Maglaveras N. Connected health and integrated care: Toward new models for chronic disease management. 2015 Sep;82(1):22-7. Epub 2015 Mar 28. Review. PubMed PMID: 25891502. doi: http://dx.doi.org/10.1016/j.maturitas.2015.03.015
  17. Dakos G, Konstantinou D, Chatzizisis YS, Chouvarda I, Filos D, Paraskevaidis S, Mantziari L, Maglaveras N, Karvounis H, Vassilikos V: P wave analysis with wavelets identifies hypertensive patients at risk of recurrence of atrial fibrillation: A case- control study and 1year follow-up. J Electrocardiol. 2015 Sep-Oct;48(5):845-52. Epub 2015 Jul 14. PubMed PMID: 26216370. doi: http://dx.doi.org/10.1016/j.jelectrocard.2015.07.012
  18. Toutouzas K, Chatzizisis YS, Riga M, Giannopoulos A, Antoniadis AP, Tu S, Fujino Y, Mitsouras D, Doulaverakis C, Tsampoulatidis I, Koutkias VG, Bouki K, Li Y, Chouvarda I, Cheimariotis G, Maglaveras N, Kompatsiaris I, Nakamura S, Reiber JH, Rybicki F, Karvounis H, Stefanadis C, Tousoulis D, Giannoglou GD: Accurate and reproducible reconstruction of coronary arteries and endothelial shear stress calculation using 3D OCT: comparative study to 3D IVUS and 3D QCA. 2015 Jun;240(2):510-9. Epub 2015 Apr 13. PubMed PMID: 25932791. doi: http://dx.doi.org/10.1016/j.atherosclerosis.2015.04.011
  19. Natsiavas P, Koutkias V, Maglaveras N: Exploring the Capacity of Open, Linked Data Sources to Assess Adverse Drug Reaction Signals. of the Int. Workshop on Semantic Web Applications and Tools for Life Sciences (SWAT4LS), CEUR, Vol. 1546, Cambridge, UK, December 7-10, 2015, pp. 224-226, Available at: http://ceur-ws.org/Vol-1546/poster_74.pdf
  20. Chatzizisis YS, Toutouzas K, Giannopoulos AA, Riga M, Antoniadis AP, Mitsouras D, Fujinom Y, Koutkias VG, Cheimariotis G, Doulaverakis C, Tsampoulatidis I, Chouvarda I, Kompatsiaris I, Nakamura S, Rybicki FJ, Maglaveras N, Tousoulis D, Karvounis C, Giannoglou GD: High-risk plaque co-localizes with low endothelial shear stress and expansive remodelling in human coronary arteries: A 3D Optical Coherence Tomography study. American Heart Association Conference, Orlando, USA, Nov. 7-11, 2015, Available at: http://circ.ahajournals.org/content/132/Suppl_3/A12063

    2014

    1. Ignea C, Pontini M, Maffei ME, Makris AM, Kampranis SC: Engineering monoterpene production in yeast using a synthetic dominant negative geranyl diphosphate synthase. ACS Synth Biol. 2014 May 16;3(5):298-306. Epub 2014 Jan 3. PubMed PMID: 24847684. doi: http://dx.doi.org/10.1021/sb400115e
    2. Ignea C, Trikka FA, Nikolaidis AK, Georgantea P, Ioannou E, Loupassaki S, Kefalas P, Kanellis AK, Roussis V, Makris AM, Kampranis SC: Efficient diterpene production in yeast by engineering Erg20p into a geranylgeranyl diphosphate synthase. Metab Eng. 2015 Jan;27:65-75. Epub 2014 Nov 7. PubMed PMID: 25446975. doi: http://dx.doi.org/10.1016/j.ymben.2014.10.008
    3. Avramidou E, Kapazoglou A, Aravanopoulos F, Xanthopoulou A, Ganopoulos I, Tsaballa A, Madesis P, Doulis A, Tsaftaris A: Global DNA methylation changes in Cucurbitaceae inter-species grafting. Crop Breeding and Applied Biotechnology 2014. doi: http://dx.doi.org/10.1590/1984-70332015v15n2n20
    4. Chatzidimopoulos M, Ganopoulos I, Madesis P, Vellios E, Tsaftaris A, Pappas AC: High‐resolution melting analysis for rapid detection and characterization of Botrytis cinerea phenotypes resistant to fenhexamid and boscalid. Plant Pathology 2014. doi: http://dx.doi.org/10.1111/ppa.12210
    5. Chatzidimopoulos M, Ganopoulos I, Vellios E, Madesis P, Tsaftaris A, Pappas AC: Development of a two-step high-resolution melting (HRM) analysis for screening sequence variants associated with resistance to the QoIs, benzimidazoles and dicarboximides in airborne inoculum of Botrytis cinerea. FEMS Microbiol Lett. 2014 Nov;360(2):126-31. Epub 2014 Sep 22. PubMed PMID: 25196894. doi: http://dx.doi.org/10.1111/1574-6968.12594
    6. Hilioti Z, Ganopoulos I, Bossis I, Tsaftaris A: LEC1-LIKE paralog transcription factor: how to survive extinction and fit in NF-Y protein complex. Gene. 2014 Jun 15;543(2):220-33. Epub 2014 Apr 13. PubMed PMID: 24727055. doi: http://dx.doi.org/10.1016/j.gene.2014.04.019
    7. Kalivas A, Ganopoulos I, Xanthopoulou A, Chatzopoulou P, Tsaftaris A, Madesis P: DNA barcode ITS2 coupled with high resolution melting (HRM) analysis for taxonomic identification of Sideritis species growing in Greece. Mol Biol Rep. 2014 Aug;41(8):5147-55. Epub 2014 May 7. PubMed PMID: 24802796. doi: http://dx.doi.org/10.1007/s11033-014-3381-5
    8. Chronopoulou E, Madesis P, Tsaftaris A, Labrou NE: Cloning and characterization of a biotic-stress-inducible glutathione transferase from Phaseolus vulgaris. Appl Biochem Biotechnol. 2014 Jan;172(2):595-609. Epub 2013 Oct 9. PubMed PMID: 24104686. doi: http://dx.doi.org/10.1007/s12010-013-0509-3
    9. Madesis P, Abraham EM, Kalivas A, Ganopoulos I, Tsaftaris A: Genetic diversity and structure of natural Dactylis glomerata L. populations revealed by morphological and microsatellite-based (SSR/ISSR) markers. Genet Mol Res. 2014 Jun 9;13(2):4226-40. PubMed PMID: 25036166. doi: http://dx.doi.org/10.4238/2014.June.9.8
    10. Madesis P, Ganopoulos I, Sakaridis I, Argiriou A, Tsaftaris A: Advances of DNA-based methods for tracing the botanical origin of food products. Food Research International 2014, 60:163-172. doi: http://dx.doi.org/10.1016/j.foodres.2013.10.042
    11. Merkouropoulos G, Michailidou S, Alifragkis A, Argiriou A, Zioziou E, Koundouras S, N N: A combined approach involving ampelographic description, berry oenological traits and molecular analysis to study native grapevine varieties of Greece. Vitis 54 (Special Issue), 99–103 (2015).
    12. Michailidou S, Kalivas A, Ganopoulos I, Stea E, Michailidis G, Tsaftaris A, Argiriou A: A multi-farm assessment of Greek black pig genetic diversity using microsatellite molecular markers. Genet Mol Res. 2014 Apr 14;13(2):2752-65. doi: PubMed PMID: 24782089. http://dx.doi.org/10.4238/2014.April.14.4
    13. Mudd EA, Madesis P, Avila EM, Day A: Excision of plastid marker genes using directly repeated DNA sequences. Methods Mol Biol. 2014;1132:107-23. doi: PubMed PMID: 24599849. http://dx.doi.org/10.1007/978-1-62703-995-6_6
    14. Mylonas PN, Giannopolitis CN, Efthimiadis PG, Menexes GC, Madesis PB, Eleftherohorinos IG: Glyphosate resistance of molecularly identified Conyza albida and Conyza bonariensis populations. Crop Protection 2014, 65:207-215. doi: http://dx.doi.org/10.1016/j.cropro.2014.07.012
    15. Sakaridis I, Ganopoulos I, Madesis P, Tsaftaris A, Argiriou A: Genotyping of Listeria monocytogenes isolates from poultry carcasses using high resolution melting (HRM) analysis. Biotechnol Biotechnol Equip. 2014 Jan 2;28(1):107-111. PubMed PMID: 26019495.
    16. Sakaridis I, Ganopoulos I, Soultos N, Madesis P, Tsaftaris A, Argiriou A: Identification of lactic acid bacteria isolated from poultry carcasses by high-resolution melting (HRM) analysis. European Food Research and Technology 2014, 238(4):691-697. doi: http://dx.doi.org/10.1007/s00217-013-2134-3
    17. Taurino M, Abelenda JA, Río-Alvarez I, Navarro C, Vicedo B, Farmaki T, Jiménez P, García-Agustín P, López-Solanilla E, Prat S, Rojo E, Sánchez-Serrano JJ, Sanmartín M: Jasmonate-dependent modifications of the pectin matrix during potato development function as a defense mechanism targeted by Dickeya dadantii virulence factors.Plant J. 2014 Feb;77(3):418-29. Epub 2014 Jan 16. PubMed PMID: 24286390. doi: http://dx.doi.org/10.1111/tpj.12393
    18. Xanthopoulou A, Ganopoulos I, Koubouris G, Tsaftaris A, Sergendani C, Kalivas A, Madesis P: Microsatellite high-resolution melting (SSR-HRM) analysis for genotyping and molecular characterization of an Olea europaea germplasm collection. Plant Genetic Resources 2014:1-5. doi: http://dx.doi.org/10.1017/S147926211400001X
    19. Xanthopoulou A, Ganopoulos I, Tsaballa A, Nianiou-Obeidat I, Kalivas A, Tsaftaris A, Madesis P: Summer Squash Identification by High-Resolution-Melting (HRM) Analysis Using Gene-Based EST–SSR Molecular Markers. Plant Molecular Biology Reporter 2014, 32(2):395-405. doi: http://dx.doi.org/10.1007/s11105-013-0658-0
    20. Chronopoulou E, Kontouri K, Chantzikonstantinou M, Pouliou F, Perperopoulou F, Voulgari G, Bosmali E, Axarli I, Nianiou-Obeidat I, Madesis P: Plant glutathione transferases: structure, antioxidant catalytic function and in planta protective role in biotic and abiotic stress. Current Chemical Biology 2014, 8(2):58-75. doi: http://dx.doi.org/10.2174/2212796809666150302213733
    1. Baliakas P, Hadzidimitriou A, Sutton LA, Minga E, Agathangelidis A, Nichelatti M, Tsanousa A, Scarfò L, Davis Z, Yan XJ, Shanafelt T, Plevova K, Sandberg Y, Vojdeman FJ, Boudjogra M, Tzenou T, Chatzouli M, Chu CC, Veronese S, Gardiner A, Mansouri L, Smedby KE, Pedersen LB, van Lom K, Giudicelli V, Francova HS, Nguyen-Khac F, Panagiotidis P, Juliusson G, Angelis L, Anagnostopoulos A, Lefranc MP, Facco M, Trentin L, Catherwood M, Montillo M, Geisler CH, Langerak AW, Pospisilova S, Chiorazzi N, Oscier D, Jelinek DF, Darzentas N, Belessi C, Davi F, Rosenquist R, Ghia P, Stamatopoulos K: Clinical effect of stereotyped B-cell receptor immunoglobulins in chronic lymphocytic leukaemia: a retrospective multicentre study. Lancet Haematol. 2014 Nov;1(2):e74-84. Epub 2014 Nov 3. PubMed PMID: 27030157. doi: http://dx.doi.org/10.1016/S2352-3026(14)00005-2
    2. Agathangelidis A, Vardi A, Baliakas P, Stamatopoulos K: Stereotyped B-cell receptors in chronic lymphocytic leukemia. Leuk Lymphoma. 2014 Oct;55(10):2252-61. Epub 2014 Mar 17. Review. PubMed PMID: 24397617. doi: http://dx.doi.org/10.3109/10428194.2013.879715
    3. Baliakas P, Iskas M, Gardiner A, Davis Z, Plevova K, Nguyen-Khac F, Malcikova J, Anagnostopoulos A, Glide S, Mould S, Stepanovska K, Brejcha M, Belessi C, Davi F, Pospisilova S, Athanasiadou A, Stamatopoulos K, Oscier D: Chromosomal translocations and karyotype complexity in chronic lymphocytic leukemia: a systematic reappraisal of classic cytogenetic data. Am J Hematol. 2014 Mar;89(3):249-55. PubMed PMID: 24166834. doi: http://dx.doi.org/10.1002/ajh.23618
    4. Bergh AC, Evaldsson C, Pedersen LB, Geisler C, Stamatopoulos K, Rosenquist R, Rosén A: Silenced B-cell receptor response to autoantigen in a poor-prognostic subset of chronic lymphocytic leukemia. 2014 Nov;99(11):1722-30. Epub 2014 Aug 1. PubMed PMID: 25085355. doi: http://dx.doi.org/10.3324/haematol.2014.106054
    5. Chatzouli M, Ntoufa S, Papakonstantinou N, Chartomatsidou E, Anagnostopoulos A, Kollia P, Ghia P, Muzio M, Stamatopoulos K, Belessi C: Heterogeneous functional effects of concomitant B cell receptor and TLR stimulation in chronic lymphocytic leukemia with mutated versus unmutated Ig genes. J Immunol. 2014 May 15;192(10):4518-24. Epub 2014 Apr 9. PubMed PMID: 24719462. doi: http://dx.doi.org/10.4049/jimmunol.1302102
    6. Gebhart J, Lechner K, Skrabs C, Sliwa T, Müldür E, Ludwig H, Nösslinger T, Vanura K, Stamatopoulos K, Simonitsch-Klupp I, Chott A, Quehenberger P,Mitterbauer-Hohendanner G, Pabinger I, Jäger U, Geissler K: Lupus anticoagulant and thrombosis in splenic marginal zone lymphoma. Thromb Res. 2014 Nov;134(5):980-4. Epub 2014 Aug 29. PubMed PMID: 25201005. doi: http://dx.doi.org/10.1016/j.thromres.2014.08.021
    7. Malcikova J, Stalika E, Davis Z, Plevova K, Trbusek M, Mansouri L, Scarfò L, Baliakas P, Gardiner A, Sutton LA, Francova HS, Agathangelidis A, Anagnostopoulos A, Tracy I, Makris A, Smardova J, Ghia P, Belessi C, Gonzalez D, Rosenquist R, Oscier D, Pospisilova S, Stamatopoulos K: The frequency of TP53 gene defects differs between chronic lymphocytic leukaemia subgroups harbouring distinct antigen receptors. Br J Haematol. 2014 Aug;166(4):621-5. Epub 2014 Apr 12. PubMed PMID: 24725250. doi: http://dx.doi.org/10.1111/bjh.12893
    8. Mansouri L, Sutton LA, Ljungström V, Sörqvist EF, Gunnarsson R, Smedby KE, Juliusson G, Stamatopoulos K, Nilsson M, Rosenquist R: Feasibility of targeted next-generation sequencing of the TP53 and ATM genes in chronic lymphocytic leukemia. 2014 Mar;28(3):694-6. Epub 2013 Oct 31. PubMed PMID: 24172824. doi: http://dx.doi.org/10.1038/leu.2013.322
    9. Stalika E, Kanellis G, Papalexandri A, Iskas M, Vrakidou E, Demonakou M, Anagnostopoulos A, Stamatopoulos K, Papadaki T: Cytotoxic T cell-mediated gastritis after rituximab treatment for gastric malt lymphoma. Leuk Lymphoma. 2014 Mar;55(3):702-5. Epub 2013 Jul 29. PubMed PMID: 23725385. doi: http://dx.doi.org/10.3109/10428194.2013.810736
    10. Stalika E, Papalexandri A, Iskas M, Stavroyianni N, Kanellis G, Kotta K, Pontikoglou C, Siorenta A, Anagnostopoulos A, Papadaki H, Papadaki T, Stamatopoulos K: Familial CD3+ T large granular lymphocyte leukemia: evidence that genetic predisposition and antigen selection promote clonal cytotoxic T-cell responses. Leuk Lymphoma. 2014 Aug;55(8):1781-7. Epub 2014 Feb 17. PubMed PMID: 24180333. doi: http://dx.doi.org/10.3109/10428194.2013.861065
    11. Vardi A, Agathangelidis A, Sutton LA, Chatzouli M, Scarfò L, Mansouri L, Douka V, Anagnostopoulos A, Darzentas N, Rosenquist R, Ghia P, Belessi C, Stamatopoulos K: IgG-switched CLL has a distinct immunogenetic signature from the common MD variant: ontogenetic implications. Clin Cancer Res. 2014 Jan 15;20(2):323-30. Epub 2013 Nov 15. PubMed PMID: 24240110. doi: http://dx.doi.org/10.1158/1078-0432.CCR-13-1993
    12. Vardi A, Agathangelidis A, Sutton LA, Ghia P, Rosenquist R, Stamatopoulos K: Immunogenetic studies of chronic lymphocytic leukemia: revelations and speculations about ontogeny and clinical evolution. Cancer Res. 2014 Aug 15;74(16):4211-6. Epub 2014 Jul 29. Review. PubMed PMID: 25074616. doi: http://dx.doi.org/10.1158/0008-5472.CAN-14-0630
    13. Xochelli A, Baliakas P, Moore S, Sole F, Wickham N, Salido M, Athanasiadou A, Oscier D, Stamatopoulos K: Translocation t(2;7)(p11.2;q21.2): a rare genetic aberration associated with B-cell lymphoproliferative disorders of marginal-zone origin.Cancer Genet. 2014 Jun;207(6):281-3. Epub 2014 Jun 25. PubMed PMID: 25178943. doi: http://dx.doi.org/10.1016/j.cancergen.2014.06.026
    14. Xochelli A, Kalpadakis C, Gardiner A, Baliakas P, Vassilakopoulos TP, Mould S, Davis Z, Stalika E, Kanellis G, Angelopoulou MK, McIver-Brown N, Ibbotson R, Sachanas S, Korkolopoulou P, Athanasiadou A, Anagnostopoulos A, Papadaki HA, Papadaki T, Stamatopoulos K, Pangalis GA, Oscier D: Clonal B-cell lymphocytosis exhibiting immunophenotypic features consistent with a marginal-zone origin: is this a distinct entity? Blood. 2014 Feb 20;123(8):1199-206. Epub 2013 Dec 3. PubMed PMID: 24300853. doi: http://dx.doi.org/10.1182/blood-2013-07-515155
    15. Malousi A, Papakonstantinou N, Tsagiopoulou M, Stamatopoulos K, Maglaveras N. Computational Analysis of Pathways Enrichment in DNA Methylation Array Data. In: The International Conference on Health Informatics.Edited by Zhang Y-T, vol. 42: Springer International Publishing; 2014: 144-147.
    16. Zarpalas D, Gkontra P, Daras P, Maglaveras N. Accurate and Fully Automatic Hippocampus Segmentation Using Subject-Specific 3D Optimal Local Maps Into a Hybrid Active Contour Model. IEEE J Transl Eng Health Med. 2014 Jan 9;2:1800116. eCollection 2014. PubMed PMID: 27170866. doi: http://dx.doi.org/10.1109/JTEHM.2014.2297953
    17. Koutkias V, Bekiaris E, Maglaveras N, Gkemou M: Towards an Ontology-Based Model for User Profile Representation in a Cloud Infrastructure. (2013) International Journal of Electronic Commerce Studies, 4 (2), pp. 379-384. doi: http://dx.doi.org/10.7903/ijecs.1042

    2013

    1. Ganopoulos I, Aravanopoulos F, Madesis P, Pasentsis K, Bosmali I, Ouzounis C, Tsaftaris A: Taxonomic identification of mediterranean pines and their hybrids based on the high resolution melting (HRM) and trnL approaches: from cytoplasmic inheritance to timber tracing. PLoS One. 2013;8(4):e60945. Epub 2013 Apr 5. PubMed PMID: 23577179. doi: http://dx.doi.org/10.1371/journal.pone.0060945
    2. Ganopoulos I, Bazakos C, Madesis P, Kalaitzis P, Tsaftaris A: Barcode DNA high-resolution melting (Bar-HRM) analysis as a novel close-tubed and accurate tool for olive oil forensic use. J Sci Food Agric. 2013 Jul;93(9):2281-6. Epub 2013 Feb 11. PubMed PMID: 23400707. doi: http://dx.doi.org/10.1002/jsfa.6040
    3. Ganopoulos I, Sakaridis I, Argiriou A, Madesis P, Tsaftaris A: A novel closed-tube method based on high resolution melting (HRM) analysis for authenticity testing and quantitative detection in Greek PDO Feta cheese. Food Chem. 2013 Nov 15;141(2):835-40. Epub 2013 Mar 27. PubMed PMID: 23790855. doi: http://dx.doi.org/10.1016/j.foodchem.2013.02.130
    4. Ganopoulos I, Tsaballa A, Xanthopoulou A, Madesis P, Tsaftaris A: Sweet cherry cultivar identification by high-resolution-melting (HRM) analysis using gene-based SNP markers. Plant Molecular Biology Reporter 2013, 31(3):763-768. doi: http://dx.doi.org/10.1007/s11105-012-0538-z
    5. Kapazoglou A, Andreadis SS, Drossou V, Madesis P, Savopoulou-Soultani M, Tsaftaris A: Cadherin Characterization and Cytochrome Oxidase (COI) HRM Analysis in Different Geographical Populations of the Mediterranean Corn Borer, Sesamia nonagrioides. Journal of Agricultural Science 2013, 6(1):p173. doi: http://dx.doi.org/10.5539/jas.v6n1p173
    6. Kapazoglou A, Drosou V, Argiriou A, Tsaftaris AS: The study of a barley epigenetic regulator, HvDME, in seed development and under drought. BMC Plant Biol. 2013 Oct 31;13:172. PubMed PMID: 24175960. doi: http://dx.doi.org/10.1186/1471-2229-13-172
    7. Kapazoglou A, Drosou V, Nitsos CK, Bossis I, Tsaftaris A, Triantafyllidis K, Hilioti Z: Biofuels Get in the Fast Lane: Developments in Plant Feedstock Production and Processing. Adv Crop Sci Tech 2013, 1(117):2. doi: http://dx.doi.org/10.4172/2329-8863.1000117
    8. Madesis P, Ganopoulos I, Bosmali I, Tsaftaris A: Barcode High Resolution Melting analysis for forensic uses in nuts: A case study on allergenic hazelnuts (Corylus avellana ). Food Research International 2013, 50(1):351-360. doi: http://dx.doi.org/10.1016/j.foodres.2012.10.038
    9. Madesis P, Ganopoulos I, Tsaftaris A: Microsatellites: evolution and contribution. Methods Mol Biol. 2013;1006:1-13. PubMed PMID: 23546780. doi: http://dx.doi.org/10.1007/978-1-62703-389-3_1
    10. Mathioudakis MM, Veiga RS, Canto T, Medina V, Mossialos D, Makris AM, Livieratos I: Pepino mosaic virus triple gene block protein 1 (TGBp1) interacts with and increases tomato catalase 1 activity to enhance virus accumulation. Mol Plant Pathol. 2013 Aug;14(6):589-601. Epub 2013 Jun 20. PubMed PMID: 23634807. doi: http://dx.doi.org/10.1111/mpp.12034
    11. Merkouropoulos G, Tsaftaris AS: Differential expression of Gossypium hirsutum USP-related genes, GhUSP1 and GhUSP2, during development and upon salt stress. Plant Molecular Biology Reporter 2013, 31(6):1539-1547. doi: http://dx.doi.org/10.1007/s11105-013-0630-z
    12. Mhadhbi H, Fotopoulos V, Mylona PV, Jebara M, Aouani ME, Polidoros AN. Alternative oxidase 1 (Aox1) gene expression in roots of Medicago truncatula is a genotype-specific component of salt stress tolerance. J Plant Physiol. 2013 Jan 1;170(1):111-4. Epub 2012 Oct 15. PubMed PMID: 23079242. doi: http://dx.doi.org/10.1016/j.jplph.2012.08.017
    13. Oxley D, Ktistakis N, Farmaki T: Differential isolation and identification of PI(3)P and PI(3,5)P2 binding proteins from Arabidopsis thaliana using an agarose- hosphatidylinositol-phosphate affinity chromatography. J Proteomics. 2013 Oct 8;91:580-94. Epub 2013 Sep 2. PubMed PMID: 24007659. doi: http://dx.doi.org/10.1016/j.jprot.2013.08.020
    14. Madesis P, Nianiou-Obeidat I, Labrou N, Tsaftaris A: The Use of Highly Specific GSTs towards the Development of Stress Tolerant Transgenic Plants. Nova Science Publishers; 2013. February 2013, Pages 263-274. ISBN: 978-162417460-5
    15. Roberts K, Merkouropoulos G, Shirsat AH: Identification of promoter regions in the Arabidopsis thaliana atExt1 extensin gene controlling late responses to wounding and pathogen attack. Biologia Plantarum 2013, 57(2):341-350. doi: http://dx.doi.org/10.1007/s10535-012-0281-1
    16. Sakaridis I, Ganopoulos I, Argiriou A, Tsaftaris A: High resolution melting analysis for quantitative detection of bovine milk in pure water buffalo mozzarella and other buffalo dairy products. International Dairy Journal 2013, 28(1):32-35. doi: http://dx.doi.org/10.1016/j.idairyj.2012.08.006
    17. Sakaridis I, Ganopoulos I, Argiriou A, Tsaftaris A: A fast and accurate method for controlling the correct labeling of products containing buffalo meat using High Resolution Melting (HRM) analysis. Meat Sci. 2013 May;94(1):84-8. Epub 2013 Jan 12. PubMed PMID: 23403299. doi: http://dx.doi.org/10.1016/j.meatsci.2012.12.017
    18. Tsaballa A, Athanasiadis C, Pasentsis K, Ganopoulos I, Nianiou-Obeidat I, Tsaftaris A: Molecular studies of inheritable grafting induced changes in pepper ( Capsicum annuum ) fruit shape. Scientia Horticulturae 2013, 149:2-8. doi: http://dx.doi.org/10.1016/j.scienta.2012.06.018
    19. Tsaftaris A, Pasentsis K, Argiriou A: Cloning and Characterization of FLOWERING LOCUS T-Like Genes from the Perennial Geophyte Saffron Crocus (Crocus sativus). Plant Molecular Biology Reporter 2013, 31(6):1558-1568. doi: http://dx.doi.org/10.1007/s11105-013-0608-x
    20. Madesis P, PIERO A, AR LP: Fluorodifen herbicide tolerance in transgenic tobacco plants overexpressing CsGSTUs. In: 57esimo Congresso nazionale della Società di Genetica Agraria: 2013.
    21. Ganopoulos I, Xanthopoulou A, Aravanopoulos F, Kazantzis K, Tsaftaris A, Madesis P: Microsatellite high-resolution melting (SSR-HRM) analysis for identification of sweet cherry rootstocks in Greece. Plant Genetic Resources: Characterization and Utilization 2013, 1:4. doi: http://dx.doi.org/10.1017/S1479262113000403
    22. Evangelia Chronopoulou M, Nikolaos E Labrou: Structure and Catalytic Properties of Human Glutathione Transferase P1-1. In: Glutathione: Biochemistry, Mechanisms of Action and Biotechnological Implications. Nova Nova Publis; 2013: 187-198.
    1. Agathangelidis A, Ntoufa S, Stamatopoulos K: B cell receptor and antigens in CLL. Adv Exp Med Biol. 2013;792:1-24. Review. PubMed PMID: 24014290. doi: http://dx.doi.org/10.1007/978-1-4614-8051-8_1
    2. Baliakas P, Kanellis G, Stavroyianni N, Fameli M, Anagnostopoulos A, Stamatopoulos K, Papadaki T: The role of bone marrow biopsy examination at diagnosis of chronic lymphocytic leukemia: a reappraisal. Leuk Lymphoma. 2013 Nov;54(11):2377-84. Epub 2013 May 15. Review. PubMed PMID: 23485170. doi: http://dx.doi.org/10.3109/10428194.2013.780653
    3. Chigrinova E, Rinaldi A, Kwee I, Rossi D, Rancoita PM, Strefford JC, Oscier D, Stamatopoulos K, Papadaki T, Berger F, Young KH, Murray F, Rosenquist R, Greiner TC, Chan WC, Orlandi EM, Lucioni M, Marasca R, Inghirami G, Ladetto M, Forconi F, Cogliatti S, Votavova H, Swerdlow SH, Stilgenbauer S, Piris MA, Matolcsy A, Spagnolo D, Nikitin E, Zamò A, Gattei V, Bhagat G, Ott G, Zucca E, Gaidano G, Bertoni F: Two main genetic pathways lead to the transformation of chronic lymphocytic leukemia to Richter syndrome. 2013 Oct 10;122(15):2673-82. Epub 2013 Sep 4. PubMed PMID: 24004666. doi: http://dx.doi.org/10.1182/blood-2013-03-489518
    4. Colombo M, Cutrona G, Reverberi D, Bruno S, Ghiotto F, Tenca C, Stamatopoulos K, Hadzidimitriou A, Ceccarelli J, Salvi S, Boccardo S, Calevo MG, De Santanna A, Truini M, Fais F, Ferrarini M: Expression of immunoglobulin receptors with distinctive features indicating antigen selection by marginal zone B cells from human spleen. Mol Med. 2013 Sep 17;19:294-302. PubMed PMID: 23877718. doi: http://dx.doi.org/10.2119/molmed.2013.00069
    5. Darzentas N, Stamatopoulos K: The significance of stereotyped B-cell receptors in chronic lymphocytic leukemia. Hematol Oncol Clin North Am. 2013 Apr;27(2):237-50. Review. PubMed PMID: 23561471. doi: http://dx.doi.org/10.1016/j.hoc.2012.12.001
    6. Darzentas N, Stamatopoulos K: Stereotyped B cell receptors in B cell leukemias and lymphomas. Methods Mol Biol. 2013;971:135-48. Review. PubMed PMID: 23296962. doi: http://dx.doi.org/10.1007/978-1-62703-269-8_8
    7. Kanduri M, Sander B, Ntoufa S, Papakonstantinou N, Sutton LA, Stamatopoulos K, Kanduri C, Rosenquist R: A key role for EZH2 in epigenetic silencing of HOX genes in mantle cell lymphoma. 2013 Dec;8(12):1280-8. Epub 2013 Oct 9. PubMed PMID: 24107828. doi: http://dx.doi.org/10.4161/epi.26546.
    8. Papakonstantinou N, Ntoufa S, Chartomatsidou E, Papadopoulos G, Hatzigeorgiou A, Anagnostopoulos A, Chlichlia K, Ghia P, Muzio M, Belessi C, Stamatopoulos K: Differential microRNA profiles and their functional implications in different immunogenetic subsets of chronic lymphocytic leukemia. Mol Med. 2013 May 20;19:115-23. PubMed PMID: 23615967. doi: http://dx.doi.org/10.2119/molmed.2013.00005
    9. Papalexandri A, Stalika E, Iskas M, Karypidou M, Zerva P, Touloumenidou T, Tachynopoulou V, Batsis I, Papadaki T, Sakellari I, Anagnostopoulos A, Stamatopoulos K: Molecular evidence for repertoire skewing of T large granular lymphocyte proliferation after allogeneic hematopoietic SCT: report of two cases. Bone Marrow Transplant. 2013 Sep;48(9):1260-1. Epub 2013 Apr 22. PubMed PMID: 23604008. doi: http://dx.doi.org/10.1038/bmt.2013.40
    10. Rosenquist R, Davi F, Stamatopoulos K. Antigens in lymphoma development–current knowledge and future directions. Semin Cancer Biol. 2013 Dec;23(6):397-8. Epub 2013 Sep 27. PubMed PMID: 24080344. doi: http://dx.doi.org/10.1016/j.semcancer.2013.09.003
    11. Strefford JC, Sutton LA, Baliakas P, Agathangelidis A, Malčíková J, Plevova K, Scarfó L, Davis Z, Stalika E, Cortese D, Cahill N, Pedersen LB, di Celle PF, Tzenou T, Geisler C, Panagiotidis P, Langerak AW, Chiorazzi N, Pospisilova S, Oscier D, Davi F, Belessi C, Mansouri L, Ghia P, Stamatopoulos K, Rosenquist R: Distinct patterns of novel gene mutations in poor-prognostic stereotyped subsets of chronic lymphocytic leukemia: the case of SF3B1 and subset #2. 2013 Nov;27(11):2196-9. Epub 2013 Apr 5. PubMed PMID: 23558524. doi: http://dx.doi.org/10.1038/leu.2013.98
    12. Sutton LA, Agathangelidis A, Belessi C, Darzentas N, Davi F, Ghia P, Rosenquist R, Stamatopoulos K: Antigen selection in B-cell lymphomas–tracing the evidence. Semin Cancer Biol. 2013 Dec;23(6):399-409. Epub 2013 Aug 8. Review. PubMed PMID: 23932942. doi: http://dx.doi.org/10.1016/j.semcancer.2013.07.006
    13. Sutton LA, Kostareli E, Stalika E, Tsaftaris A, Anagnostopoulos A, Darzentas N, Rosenquist R, Stamatopoulos K: Temporal dynamics of clonal evolution in chronic lymphocytic leukemia with stereotyped IGHV4-34/IGKV2-30 antigen receptors: longitudinal immunogenetic evidence. Mol Med. 2013 Aug 28;19:230-6. PubMed PMID: 23922244. doi: http://dx.doi.org/10.2119/molmed.2013.00042
    14. ten Hacken E, Scielzo C, Bertilaccio MT, Scarfò L, Apollonio B, Barbaglio F, Stamatopoulos K, Ponzoni M, Ghia P, Caligaris-Cappio F: Targeting the LYN/HS1 signaling axis in chronic lymphocytic leukemia. 2013 Mar 21;121(12):2264-73. Epub 2013 Jan 16. PubMed PMID: 23325840. doi: http://dx.doi.org/10.1182/blood-2012-09-457119
    15. Vanura K, Rieder F, Kastner MT, Biebl J, Sandhofer M, Le T, Strassl R, Puchhammer-Stöckl E, Perkmann T, Steininger CF, Stamatopoulos K, Graninger W, Jäger U, Steininger C: Chronic lymphocytic leukemia patients have a preserved cytomegalovirus-specific antibody response despite progressive hypogammaglobulinemia. PLoS One. 2013 Oct 23;8(10):e78925. eCollection 2013. PubMed PMID: 24194956. doi: http://dx.doi.org/10.1371/journal.pone.0078925
    16. Vardi A, Dagklis A, Scarfò L, Jelinek D, Newton D, Bennett F, Almeida J, Rodriguez-Caballero A, Allgood S, Lanasa M, Cortelezzi A, Orlandi E, Veronese S, Montillo M, Rawstron A, Shanafelt T, Orfao A, Stamatopoulos K, Ghia P: Immunogenetics shows that not all MBL are equal: the larger the clone, the more similar to CLL. 2013 May 30;121(22):4521-8. Epub 2013 Apr 17. PubMed PMID: 23596047. doi: http://dx.doi.org/10.1182/blood-2012-12-471698
    17. Tsakou E, Agathangelidis A, Boudjoghra M, Raff T, Dagklis A, Chatzouli M, Smilevska T, Bourikas G, Merle-Beral H, Manioudaki-Kavallieratou E, Anagnostopoulos A, Brüggemann M, Davi F, Stamatopoulos K, Belessi C: Partial versus productive immunoglobulin heavy locus rearrangements in chronic lymphocytic leukemia: implications for B-cell receptor stereotypy. Mol Med. 2012 Feb 10;18:138-45. Erratum in: Mol Med. 2013;19:332. Agathagelidis, Andreas [corrected to Agathangelidis, Andreas]. PubMed PMID: 21968789. doi: http://dx.doi.org/10.2119/molmed.2011.00216
    18. Kilintzis V, Moulos I, Koutkias V, Maglaveras N: Exploiting the universAAL platform for the design and development of a physical activity monitoring application. Proceedings of the 6th International Conference on PErvasive Technologies Related to Assistive Environments. Rhodes, Greece: ACM; 2013: 1-4. doi: http://dx.doi.org/10.1145/2504335.2504351

    2012

    1. Bosmali I, Ganopoulos I, Madesis P, Tsaftaris A: Microsatellite and DNA-barcode regions typing combined with High Resolution Melting (HRM) analysis for food forensic uses: A case study on lentils ( Lens culinaris ). Food Research International 2012, 46(1):141-147. doi: http://dx.doi.org/10.1016/j.foodres.2011.12.013
    2. Bousios A, Kourmpetis YA, Pavlidis P, Minga E, Tsaftaris A, Darzentas N: The turbulent life of Sirevirus retrotransposons and the evolution of the maize genome: more than ten thousand elements tell the story. Plant J. 2012 Feb;69(3):475-88. Epub 2011 Nov 8. PubMed PMID: 21967390. doi: http://dx.doi.org/10.1111/j.1365-313X.2011.04806.x
    3. Ganopoulos I, Aravanopoulos F, Argiriou A, Tsaftaris A: Genome and population dynamics under selection and neutrality: an example of S-allele diversity in wild cherry (Prunus avium L.). Tree Genetics & Genomes 2012, 8(6):1181-1190. doi: http://dx.doi.org/10.1007/s11295-012-0504-9
    4. Ganopoulos I, Bosmali I, Madesis P, Tsaftaris A: Microsatellite genotyping with HRM (High Resolution Melting) analysis for identification of the PGI common bean variety Plake Megalosperma Prespon. European Food Research and Technology 2012, 234(3):501-508. doi: http://dx.doi.org/10.1007/s00217-011-1653-z
    5. Ganopoulos I, Madesis P, Darzentas N, Argiriou A, Tsaftaris A: Barcode High Resolution Melting (Bar-HRM) analysis for detection and quantification of PDO “Fava Santorinis” (Lathyrus clymenum) adulterants. Food Chem. 2012 Jul 15;133(2):505-12. Epub 2012 Jan 20. PubMed PMID: 25683426. doi: http://dx.doi.org/10.1016/j.foodchem.2012.01.015
    6. Ganopoulos I, Madesis P, Tsaftaris A: Universal ITS2 barcoding DNA region coupled with high-resolution melting (HRM) analysis for seed authentication and adulteration testing in leguminous forage and pasture species. Plant Molecular Biology Reporter 2012, 30(6):1322-1328. doi: http://dx.doi.org/10.1007/s11105-012-0453-3
    7. Ganopoulos I, Madesis P, Zambounis A, Tsaftaris A: High-resolution melting analysis allowed fast and accurate closed-tube genotyping of Fusarium oxysporum formae speciales complex. FEMS Microbiol Lett. 2012 Sep;334(1):16-21. Epub 2012 Jul 3. PubMed PMID: 22670678. doi: http://dx.doi.org/10.1111/j.1574-6968.2012.02610.x
    8. Ignea C, Trikka FA, Kourtzelis I, Argiriou A, Kanellis AK, Kampranis SC, Makris AM: Positive genetic interactors of HMG2 identify a new set of genetic perturbations for improving sesquiterpene production in Saccharomyces cerevisiae. Microb Cell Fact. 2012 Dec 22;11:162. PubMed PMID: 23259547. doi: http://dx.doi.org/10.1186/1475-2859-11-162
    9. Kapazoglou A, Engineer C, Drosou V, Kalloniati C, Tani E, Tsaballa A, Kouri ED, Ganopoulos I, Flemetakis E, Tsaftaris AS: The study of two barley type I-like MADS-box genes as potential targets of epigenetic regulation during seed development. BMC Plant Biol. 2012 Sep 17;12:166. PubMed PMID: 22985436. doi: http://dx.doi.org/10.1186/1471-2229-12-166
    10. Karali D, Oxley D, Runions J, Ktistakis N, Farmaki T: The Arabidopsis thaliana immunophilin ROF1 directly interacts with PI(3)P and PI(3,5)P2 and affects germination under osmotic stress. PLoS One. 2012;7(11):e48241. Epub 2012 Nov 2. PubMed PMID: 23133621. doi: http://dx.doi.org/10.1371/journal.pone.0048241
    11. Kampranis SC, Makris AM: Developing a yeast cell factory for the production of terpenoids. Comput Struct Biotechnol J. 2012 Nov 5;3:e201210006. eCollection 2012. Review. PubMed PMID: 24688666. doi: http://dx.doi.org/10.5936/csbj.201210006
    12. Lazaridou M, Kostopoulou P, Karatassiou M, Merkouropoulos G: Comparative investigation of physiological responses of field-grown alfalfa and tall fescue to cutting under different water regimes. African Journal of Range & Forage Science 2012, 29(3):147-152. doi: http://dx.doi.org/10.2989/10220119.2012.744775
    13. Madesis P, Ganopoulos I, Anagnostis A, Tsaftaris A: The application of Bar-HRM (Barcode DNA-High Resolution Melting) analysis for authenticity testing and quantitative detection of bean crops (Leguminosae) without prior DNA purification. Food Control 2012, 25(2):576-582. doi: http://dx.doi.org/10.1016/j.foodcont.2011.11.034
    14. Madesis P, Ganopoulos I, Ralli P, Tsaftaris A: Barcoding the major Mediterranean leguminous crops by combining universal chloroplast and nuclear DNA sequence targets. Genet Mol Res. 2012 Aug 16;11(3):2548-58. PubMed PMID: 22869075. doi: http://dx.doi.org/10.4238/2012.July.10.10
    15. Michailidis G, Avdi M, Argiriou A: Transcriptional profiling of antimicrobial peptides avian β-defensins in the chicken ovary during sexual maturation and in response to Salmonella enteritidis infection. Res Vet Sci. 2012 Feb;92(1):60-5. Epub 2010 Nov 10. PubMed PMID: 21071048. doi: http://dx.doi.org/10.1016/j.rvsc.2010.10.010
    16. Papaefthimiou D, Kapazoglou A, Tsaftaris AS: Cloning and characterization of SOC1 homologs in barley (Hordeum vulgare) and their expression during seed development and in response to vernalization. Physiol Plant. 2012 Sep;146(1):71-85. Epub 2012 May 10. PubMed PMID: 22409646. doi: http://dx.doi.org/10.1111/j.1399-3054.2012.01610.x
    17. Papaefthimiou D, Tsaftaris AS: Characterization of a drought inducible trithorax-like H3K4 methyltransferase from barley. Biologia Plantarum 2012, 56(4):683-692. doi: http://dx.doi.org/10.1007/s10535-012-0125-z
    18. Papaefthimiou D, Tsaftaris AS: Significant induction by drought of HvPKDM7-1, a gene encoding a jumonji-like histone demethylase homologue in barley (H. vulgare). Acta Physiologiae Plantarum 2012, 34(3):1187-1198. doi: http://dx.doi.org/10.1007/s11738-011-0915-5
    19. Tsaballa A, Pasentsis K, Tsaftaris AS: Τhe role of a gibberellin 20-oxidase gene in fruit development in pepper (Capsicum annuum). Plant Molecular Biology Reporter 2012, 30(3):556-565. doi: http://dx.doi.org/10.1007/s11105-011-0364-8
    20. Tsaftaris A, Pasentsis K, Kalivas A, Michailidou S, Madesis P, Argiriou A: Isolation of a CENTRORADIALIS/TERMINAL FLOWER1 homolog in saffron (Crocus sativus L.): characterization and expression analysis. Mol Biol Rep. 2012 Aug;39(8):7899-910. Epub 2012 Apr 26. PubMed PMID: 22535321. doi: http://dx.doi.org/10.1007/s11033-012-1634-8
    21. Tsaftaris AS, Pasentsis K, Madesis P, Argiriou A: Sequence characterization and expression analysis of three APETALA2-like genes from saffron crocus. Plant Molecular Biology Reporter 2012, 30(2):443-452. doi: http://dx.doi.org/10.1007/s11105-011-0355-9
    22. Varvogli AAC, Fylaktakidou KC, Farmaki T, Stefanakis JG, Koumbis AE: Versatile Synthesis of 1‐O‐(ω‐Aminolauryl)‐I (4, 5) P2. European Journal of Organic Chemistry 2012, 2012(29):5855-5862. doi: http://dx.doi.org/10.1002/ejoc.201200726
    23. Zambounis AG, Kalamaki MS, Tani EE, Paplomatas EJ, Tsaftaris AS: Expression analysis of defense-related genes in cotton (Gossypium hirsutum) after Fusarium oxysporum f. sp. vasinfectum infection and following chemical elicitation using a salicylic acid analog and methyl jasmonate. Plant Molecular Biology Reporter 2012, 30(1):225-234. doi: http://dx.doi.org/10.1007/s11105-011-0335-0
    24. Argiriou A, Kalivas A, Michailidis G, Tsaftaris A: Characterization of PROFILIN genes from allotetraploid (Gossypium hirsutum) cotton and its diploid progenitors and expression analysis in cotton genotypes differing in fiber characteristics. Mol Biol Rep. 2012 Apr;39(4):3523-32. Epub 2011 Jul 3. PubMed PMID: 21725637. doi: http://dx.doi.org/10.1007/s11033-011-1125-3
    25. Psomopoulos FE, Siarkou VI, Papanikolaou N, Iliopoulos I, Tsaftaris AS, Promponas VJ, Ouzounis CA: The chlamydiales pangenome revisited: structural stability and functional coherence. Genes (Basel). 2012 May 16;3(2):291-319. PubMed PMID: 24704919. doi: http://dx.doi.org/10.3390/genes3020291
    26. Tsaftaris A, Kapazoglou A, Darzentas N: From epigenetics to epigenomics and their implications in plant breeding. Plant Biotechnology and Agriculture 2012, Pages 207-226. ISBN: 978-012381466-1
    27. Bousios A, Minga E, Kalitsou N, Pantermali M, Tsaballa A, Darzentas N: MASiVEdb: the Sirevirus Plant Retrotransposon Database. BMC Genomics. 2012 Apr 30;13:158. PubMed PMID: 22545773. doi: http://dx.doi.org/10.1186/1471-2164-13-158
    28. Madesis P, Tsaftaris A, PIERO A, AR LP: Improved xenobiotic detoxifying activity of transformed tabacco leaves over-expressing the sweet orange glutathione transferase (CsGSTU) RKV mutan. 2012.
    29. Lo Cicero L, Madesis P, Tsaftaris A, Lo Piero A: Role of the sweet orange tau glutathione transferase (csgstu) in transgenic tobacco plant detoxification from xenobiotics. In: XII International Citrus Congress: 2012. 86 S05P17–.
    30. Chronopoulou E, Madesis P, Asimakopoulou B, Tsaftaris A, Labrou N: Molecular and catalytic characterization of the herbicide-inducible glutathione transferases from Phaseolus vulgaris. 2012.
    31. Chronopoulou E, Madesis P, Asimakopoulou B, Platis D, Tsaftaris A, Labrou NE: Catalytic and structural diversity of the fluazifop-inducible glutathione transferases from Phaseolus vulgaris. Planta. 2012 Jun;235(6):1253-69. Epub 2011 Dec 28. PubMed PMID: 22203322. doi: http://dx.doi.org/10.1007/s00425-011-1572-z
    32. Sheppard AE, Madesis P, Lloyd AH, Day A, Ayliffe MA, Timmis JN: Introducing an RNA editing requirement into a plastid-localised transgene reduces but does not eliminate functional gene transfer to the nucleus. Plant Mol Biol. 2011 Jul;76(3-5):299-309. Epub 2011 Mar 15. PubMed PMID: 21404088. doi: http://dx.doi.org/10.1007/s11103-011-9764-2
    1. Agathangelidis A, Darzentas N, Hadzidimitriou A, Brochet X, Murray F, Yan XJ, Davis Z, van Gastel-Mol EJ, Tresoldi C, Chu CC, Cahill N, Giudicelli V, Tichy B, Pedersen LB, Foroni L, Bonello L, Janus A, Smedby K, Anagnostopoulos A, Merle-Beral H, Laoutaris N, Juliusson G, di Celle PF, Pospisilova S, Jurlander J, Geisler C, Tsaftaris A, Lefranc MP, Langerak AW, Oscier DG, Chiorazzi N, Belessi C, Davi F, Rosenquist R, Ghia P, Stamatopoulos K: Stereotyped B-cell receptors in one-third of chronic lymphocytic leukemia: a molecular classification with implications for targeted therapies. Blood. 2012 May 10;119(19):4467-75. Epub 2012 Mar 13. PubMed PMID: 22415752. doi: http://dx.doi.org/10.1182/blood-2011-11-393694
    2. Bikos V, Darzentas N, Hadzidimitriou A, Davis Z, Hockley S, Traverse-Glehen A, Algara P, Santoro A, Gonzalez D, Mollejo M, Dagklis A, Gangemi F, Bosler DS, Bourikas G, Anagnostopoulos A, Tsaftaris A, Iannitto E, Ponzoni M, Felman P, Berger F, Belessi C, Ghia P, Papadaki T, Dogan A, Degano M, Matutes E, Piris MA, Oscier D, Stamatopoulos K: Over 30% of patients with splenic marginal zone lymphoma express the same immunoglobulin heavy variable gene: ontogenetic implications. Leukemia. 2012 Jul;26(7):1638-46. Epub 2012 Jan 6. PubMed PMID: 22222599. doi: http://dx.doi.org/10.1038/leu.2012.3
    3. Bikos V, Stalika E, Baliakas P, Darzentas N, Davis Z, Traverse-Glehen A, Dagklis A, Kanellis G, Anagnostopoulos A, Tsaftaris A, Ponzoni M, Berger F, Felman P, Ghia P, Papadaki T, Oscier D, Belessi C, Stamatopoulos K: Selection of antigen receptors in splenic marginal-zone lymphoma: further support from the analysis of the immunoglobulin light-chain gene repertoire. Leukemia. 2012 Dec;26(12):2567-9. Epub 2012 Jun 18. PubMed PMID: 22858907. doi: http://dx.doi.org/10.1038/leu.2012.207
    4. Dagklis A, Ponzoni M, Govi S, Cangi MG, Pasini E, Charlotte F, Vino A, Doglioni C, Davì F, Lossos IS, Ntountas I, Papadaki T, Dolcetti R, Ferreri AJ, Stamatopoulos K, Ghia P: Immunoglobulin gene repertoire in ocular adnexal lymphomas: hints on the nature of the antigenic stimulation. Leukemia. 2012 Apr;26(4):814-21. Epub 2011 Oct 25. PubMed PMID: 22024723. doi: http://dx.doi.org/10.1038/leu.2011.276
    5. Halldórsdóttir AM, Kanduri M, Marincevic M, Mansouri L, Isaksson A, Göransson H, Axelsson T, Agarwal P, Jernberg-Wiklund H, Stamatopoulos K, Sander B, Ehrencrona H, Rosenquist R: Mantle cell lymphoma displays a homogenous methylation profile: a comparative analysis with chronic lymphocytic leukemia. Am J Hematol. 2012 Apr;87(4):361-7. Epub 2012 Feb 28. PubMed PMID: 22374828. doi: http://dx.doi.org/10.1002/ajh.23115
    6. Ibbotson R, Athanasiadou A, Sutton LA, Davis Z, Gardiner A, Baliakas P, Gunnarsson R, Anagnostopoulos A, Juliusson G, Rosenquist R, Oscier D, Stamatopoulos K: Coexistence of trisomies of chromosomes 12 and 19 in chronic lymphocytic leukemia occurs exclusively in the rare IgG-positive variant. Leukemia. 2012 Jan;26(1):170-2. Epub 2011 Jul 26. PubMed PMID: 21788947. doi: http://dx.doi.org/10.1038/leu.2011.186
    7. Kanduri M, Marincevic M, Halldórsdóttir AM, Mansouri L, Junevik K, Ntoufa S, Kultima HG, Isaksson A, Juliusson G, Andersson PO, Ehrencrona H, Stamatopoulos K, Rosenquist R: Distinct transcriptional control in major immunogenetic subsets of chronic lymphocytic leukemia exhibiting subset-biased global DNA methylation profiles. Epigenetics. 2012 Dec 1;7(12):1435-42. Epub 2012 Nov 15. PubMed PMID: 23154584. doi: http://dx.doi.org/10.4161/epi.22901
    8. Kostareli E, Gounari M, Agathangelidis A, Stamatopoulos K: Immunoglobulin gene repertoire in chronic lymphocytic leukemia: insight into antigen selection and microenvironmental interactions. Mediterr J Hematol Infect Dis. 2012;4(1):e2012052. Epub 2012 Aug 9. PubMed PMID: 22973496. doi: http://dx.doi.org/10.4084/MJHID.2012.052
    9. Kostareli E, Gounari M, Janus A, Murray F, Brochet X, Giudicelli V, Pospisilova S, Oscier D, Foroni L, di Celle PF, Tichy B, Pedersen LB, Jurlander J, Ponzoni M, Kouvatsi A, Anagnostopoulos A, Thompson K, Darzentas N, Lefranc MP, Belessi C, Rosenquist R, Davi F, Ghia P, Stamatopoulos K: Antigen receptor stereotypy across B-cell lymphoproliferations: the case of IGHV4-59/IGKV3-20 receptors with rheumatoid factor activity. Leukemia. 2012 May;26(5):1127-31. Epub 2011 Nov 4. PubMed PMID: 22051533. doi: http://dx.doi.org/10.1038/leu.2011.311
    10. Navarro A, Clot G, Royo C, Jares P, Hadzidimitriou A, Agathangelidis A, Bikos V, Darzentas N, Papadaki T, Salaverria I, Pinyol M, Puig X, Palomero J, Vegliante MC, Amador V, Martinez-Trillos A, Stefancikova L, Wiestner A, Wilson W, Pott C, Calasanz MJ, Trim N, Erber W, Sander B, Ott G, Rosenwald A, Colomer D, Giné E, Siebert R, Lopez-Guillermo A, Stamatopoulos K, Beà S, Campo E: Molecular subsets of mantle cell lymphoma defined by the IGHV mutational status and SOX11 expression have distinct biologic and clinical features. Cancer Res. 2012 Oct 15;72(20):5307-16. Epub 2012 Aug 20. PubMed PMID: 22915760. doi: http://dx.doi.org/10.1158/0008-5472.CAN-12-1615
    11. Norberg M, Lindhagen E, Kanduri M, Rickardson L, Sundström C, Stamatopoulos K, Rosenquist R, Åleskog A: Screening for cytotoxic compounds in poor-prognostic chronic lymphocytic leukemia. Anticancer Res. 2012 Aug;32(8):3125-36. PubMed PMID: 22843883
    12. Ntoufa S, Vardi A, Papakonstantinou N, Anagnostopoulos A, Aleporou-Marinou V, Belessi C, Ghia P, Caligaris-Cappio F, Muzio M, Stamatopoulos K: Distinct innate immunity pathways to activation and tolerance in subgroups of chronic lymphocytic leukemia with distinct immunoglobulin receptors. Mol Med. 2012 Dec 6;18:1281-91. PubMed PMID: 22437326. doi: http://dx.doi.org/10.2119/molmed.2011.00480
    13. Ponzoni M, Kanellis G, Pouliou E, Baliakas P, Scarfò L, Ferreri AJ, Doglioni C, Bikos V, Dagklis A, Anagnostopoulos A, Ghia P, Stamatopoulos K, Papadaki T: Bone marrow histopathology in the diagnostic evaluation of splenic marginal-zone and splenic diffuse red pulp small B-cell lymphoma: a reliable substitute for spleen histopathology? Am J Surg Pathol. 2012 Nov;36(11):1609-18. PubMed PMID: 23073320. doi: http://dx.doi.org/10.1097/PAS.0b013e318271243d
    14. Shinawi T, Hill V, Dagklis A, Baliakas P, Stamatopoulos K, Agathanggelou A, Stankovic T, Maher ER, Ghia P, Latif F: KIBRA gene methylation is associated with unfavorable biological prognostic parameters in chronic lymphocytic leukemia. Epigenetics. 2012 Mar;7(3):211-5. PubMed PMID: 22430796. doi: http://dx.doi.org/10.4161/epi.7.3.19222
    15. Koutkias V, Bekiaris E, Maglaveras N, Gemou M: An Ontology-based Approach for User Profile Representation and Management in a Cloud Infrastructure. of Int. Conf. on INTERNET STUDIES (NETs), Aug. 17-19, 2012, Bangkok, Thailand.

    2011

    1. Chronopoulou E, Axarli I, Nianiou-Obeidat I, Madesis P, Tsaftaris A, Labrou N: Structure and antioxidant catalytic function of plant glutathione transferases. Current Chemical Biology 2011, 5(1):64-74. doi: http://dx.doi.org/10.2174/187231311793564306
    2. Ganopoulos I, Aravanopoulos FA, Argiriou A, Kalivas A, Tsaftaris A: Is the genetic diversity of small scattered forest tree populations at the southern limits of their range more prone to stochastic events? A wild cherry case study by microsatellite-based markers. Tree Genetics & Genomes 2011, 7(6):1299-1313. doi: http://dx.doi.org/10.1007/s11295-011-0414-2
    3. Ganopoulos I, Argiriou A, Tsaftaris A: Microsatellite high resolution melting (SSR-HRM) analysis for authenticity testing of protected designation of origin (PDO) sweet cherry products. Food Control 2011, 22(3):532-541. doi: http://dx.doi.org/10.1016/j.foodcont.2010.09.040
    4. Ganopoulos I, Argiriou A, Tsaftaris A: Adulterations in Basmati rice detected quantitatively by combined use of microsatellite and fragrance typing with High Resolution Melting (HRM) analysis. Food Chemistry 2011, 129(2):652-659. doi: http://dx.doi.org/10.1016/j.foodchem.2011.04.109
    5. Ganopoulos I, Merkouropoulos G, Pantazis S, Tsipouridis C, Tsaftaris A: Assessing molecular and morpho-agronomical diversity and identification of ISSR markers associated with fruit traits in quince (Cydonia oblonga). Genet Mol Res. 2011 Nov 4;10(4):2729-46. PubMed PMID: 22095599. doi: http://dx.doi.org/10.4238/2011.November.4.7
    6. Ganopoulos IV, Kazantzis K, Chatzicharisis I, Karayiannis I, Tsaftaris AS: Genetic diversity, structure and fruit trait associations in Greek sweet cherry cultivars using microsatellite based (SSR/ISSR) and morpho-physiological markers. Euphytica 2011, 181(2):237-251. doi: http://dx.doi.org/10.1007/s10681-011-0416-z
    7. Gisby MF, Mellors P, Madesis P, Ellin M, Laverty H, O’Kane S, Ferguson MW, Day A: A synthetic gene increases TGFβ3 accumulation by 75-fold in tobacco chloroplasts enabling rapid purification and folding into a biologically active molecule. Plant Biotechnol J. 2011 Jun;9(5):618-28. Epub 2011 Apr 27. PubMed PMID: 21535357. doi: http://dx.doi.org/10.1111/j.1467-7652.2011.00619.x
    8. Ignea C, Cvetkovic I, Loupassaki S, Kefalas P, Johnson CB, Kampranis SC, Makris AM: Improving yeast strains using recyclable integration cassettes, for the production of plant terpenoids. Microb Cell Fact. 2011 Jan 28;10:4. PubMed PMID: 21276210. doi: http://dx.doi.org/10.1186/1475-2859-10-4
    9. Kapazoglou A, Tsaftaris A: Epigenetic Chromatin Regulators as Mediators of Abiotic Stress Responses in Cereals. 2011. doi: http://dx.doi.org/10.5772/36025
    10. Madesis P, Konstantinidou E, Tsaftaris A, Nianiou-Obeidat I: Micropropagation and shoot regeneration of Cistus creticus ssp. Creticus. 2011 Oct 1(8): 54-58
    11. Mhadhbi H, Fotopoulos V, Mylona PV, Jebara M, Elarbi Aouani M, Polidoros AN: Antioxidant gene-enzyme responses in Medicago truncatula genotypes with different degree of sensitivity to salinity. Physiol Plant. 2011 Mar;141(3):201-14. Epub 2010 Dec 28. PubMed PMID: 21114673. doi: http://dx.doi.org/10.1111/j.1399-3054.2010.01433.x
    12. Rajawat Y, Hilioti Z, Bossis I: Retinoic acid induces autophagosome maturation through redistribution of the cation-independent mannose-6-phosphate receptor. Antioxid Redox Signal. 2011 Jun;14(11):2165-77. Epub 2011 Jan 31. PubMed PMID: 20812861. doi: http://dx.doi.org/10.1089/ars.2010.3491
    13. Tani E, Tsaballa A, Stedel C, Kalloniati C, Papaefthimiou D, Polidoros A, Darzentas N, Ganopoulos I, Flemetakis E, Katinakis P, Tsaftaris A: The study of a SPATULA-like bHLH transcription factor expressed during peach (Prunus persica) fruit development. Plant Physiol Biochem. 2011 Jun;49(6):654-63. Epub 2011 Jan 27. PubMed PMID: 21324706. doi: http://dx.doi.org/10.1016/j.plaphy.2011.01.020
    14. Tsaballa A, Pasentsis K, Darzentas N, Tsaftaris AS: Multiple evidence for the role of an Ovate-like gene in determining fruit shape in pepper. BMC Plant Biol. 2011 Mar 14;11:46. PubMed PMID: 21401913. doi: http://dx.doi.org/10.1186/1471-2229-11-46
    15. Tsaftaris A, Pasentsis K, Makris A, Darzentas N, Polidoros A, Kalivas A, Argiriou A: The study of the E-class SEPALLATA3-like MADS-box genes in wild-type and mutant flowers of cultivated saffron crocus (Crocus sativus L.) and its putative progenitors. J Plant Physiol. 2011 Sep 15;168(14):1675-84. Epub 2011 May 31. PubMed PMID: 21621873. doi: http://dx.doi.org/10.1016/j.jplph.2011.03.015
    16. Theodosiou T, Vizirianakis IS, Angelis L, Tsaftaris A, Darzentas N. MeSHy: Mining unanticipated PubMed information using frequencies of occurrences and concurrences of MeSH terms. J Biomed Inform. 2011 Dec;44(6):919-26. Epub 2011 Jun 13. PubMed PMID: 21684350. doi: http://dx.doi.org/10.1016/j.jbi.2011.05.009
    17. Kalivas A, Xanthopoulos F, Kehagia O, Tsaftaris AS: Agronomic characterization, genetic diversity and association analysis of cotton cultivars using simple sequence repeat molecular markers. Genet Mol Res. 2011 Feb 8;10(1):208-17. PubMed PMID: 21341213. doi: http://dx.doi.org/10.4238/vol10-1gmr998
    18. Madesis P, Tsaftaris A, PIERO A, AR LP: First results on the overexpression of CsGSTU isoenzymes in transgenic tobacco plants. 2011.
    1. Agathangelidis A, Hadzidimitriou A, Rosenquist R, Stamatopoulos K: Unlocking the secrets of immunoglobulin receptors in mantle cell lymphoma: implications for the origin and selection of the malignant cells. Semin Cancer Biol. 2011 Nov;21(5):299-307. Epub 2011 Sep 18. Review. PubMed PMID: 21946621. doi: http://dx.doi.org/10.1016/j.semcancer.2011.09.009
    2. Arvaniti E, Ntoufa S, Papakonstantinou N, Touloumenidou T, Laoutaris N, Anagnostopoulos A, Lamnissou K, Caligaris-Cappio F, Stamatopoulos K, Ghia P, Muzio M, Belessi C: Toll-like receptor signaling pathway in chronic lymphocytic leukemia: distinct gene expression profiles of potential pathogenic significance in specific subsets of patients. Haematologica. 2011 Nov;96(11):1644-52. Epub 2011 Jul 12. PubMed PMID: 21750087. doi: http://dx.doi.org/10.3324/haematol.2011.044792
    3. Berkowska MA, Driessen GJ, Bikos V, Grosserichter-Wagener C, Stamatopoulos K, Cerutti A, He B, Biermann K, Lange JF, van der Burg M, van Dongen JJ, van Zelm MC: Human memory B cells originate from three distinct germinal center-dependent and -independent maturation pathways. Blood. 2011 Aug 25;118(8):2150-8. Epub 2011 Jun 20. PubMed PMID: 21690558. doi: http://dx.doi.org/10.1182/blood-2011-04-345579
    4. Hadzidimitriou A, Agathangelidis A, Darzentas N, Murray F, Delfau-Larue MH, Pedersen LB, Lopez AN, Dagklis A, Rombout P, Beldjord K, Kolstad A, Dreyling MH, Anagnostopoulos A, Tsaftaris A, Mavragani-Tsipidou P, Rosenwald A, Ponzoni M, Groenen P, Ghia P, Sander B, Papadaki T, Campo E, Geisler C, Rosenquist R, Davi F, Pott C, Stamatopoulos K: Is there a role for antigen selection in mantle cell lymphoma? Immunogenetic support from a series of 807 cases. Blood. 2011 Sep 15;118(11):3088-95. Epub 2011 Jul 26. PubMed PMID: 21791422. doi: http://dx.doi.org/10.1182/blood-2011-03-343434
    5. Langerak AW, Davi F, Ghia P, Hadzidimitriou A, Murray F, Potter KN, Rosenquist R, Stamatopoulos K, Belessi C; European Research Initiative on CLL (ERIC): Immunoglobulin sequence analysis and prognostication in CLL: guidelines from the ERIC review board for reliable interpretation of problematic cases. Leukemia. 2011 Jun;25(6):979-84. Epub 2011 Apr 1. PubMed PMID: 21455216. doi: http://dx.doi.org/10.1038/leu.2011.49
    6. Rossi D, Spina V, Deambrogi C, Rasi S, Laurenti L, Stamatopoulos K, Arcaini L, Lucioni M, Rocque GB, Xu-Monette ZY, Visco C, Chang J, Chigrinova E, Forconi F, Marasca R, Besson C, Papadaki T, Paulli M, Larocca LM, Pileri SA, Gattei V, Bertoni F, Foà R, Young KH, Gaidano G: The genetics of Richter syndrome reveals disease heterogeneity and predicts survival after transformation. Blood. 2011 Mar 24;117(12):3391-401. Epub 2011 Jan 25. PubMed PMID: 21266718. doi: http://dx.doi.org/10.1182/blood-2010-09-302174
    7. Stalika E, Papalexandri A, Kannelis G, Batsis I, Papadaki T, Anagnostopoulos A, Stamatopoulos K: Transient monoclonal CD3+ T large granular lymphocyte proliferation in a case of mantle cell lymphoma with Rituximab-associated late onset neutropenia. Hematol Oncol. 2011 Sep;29(3):144-6. Epub 2010 Sep 14. PubMed PMID: 20842646. doi: http://dx.doi.org/10.1002/hon.963
    8. van der Fits L, Sandberg Y, Darzentas N, Zoutman WH, Tielemans D, Wolvers-Tettero IL, Vermeer MH, Langerak AW: A restricted clonal T-cell receptor αβ repertoire in Sézary syndrome is indicative of superantigenic stimulation. Br J Dermatol. 2011 Jul;165(1):78-84. Epub 2011 Jun 2. PubMed PMID: 21410672. doi: http://dx.doi.org/10.1111/j.1365-2133.2011.10308.x

    2010

    1. Benekos K, Kissoudis C, Nianiou-Obeidat I, Labrou N, Madesis P, Kalamaki M, Makris A, Tsaftaris A: Overexpression of a specific soybean GmGSTU4 isoenzyme improves diphenyl ether and chloroacetanilide herbicide tolerance of transgenic tobacco plants. J Biotechnol. 2010 Oct 1;150(1):195-201. Epub 2010 Jul 16. PubMed PMID: 20638428. doi: http://dx.doi.org/10.1016/j.jbiotec.2010.07.011
    2. Bousios A, Darzentas N, Tsaftaris A, Pearce SR: Highly conserved motifs in non-coding regions of Sirevirus retrotransposons: the key for their pattern of distribution within and across plants? BMC Genomics. 2010 Feb 4;11:89. PubMed PMID: 20132532. doi: http://dx.doi.org/10.1186/1471-2164-11-89
    3. Chatzopoulou FM, Makris AM, Argiriou A, Degenhardt J, Kanellis AK: EST analysis and annotation of transcripts derived from a trichome-specific cDNA library from Salvia fruticosa. Plant Cell Rep. 2010 May;29(5):523-34. Epub 2010 Mar 24. PubMed PMID: 20333525. doi: http://dx.doi.org/10.1007/s00299-010-0841-9
    4. Darzentas N, Bousios A, Apostolidou V, Tsaftaris AS: MASiVE: Mapping and Analysis of Sirevirus Elements in plant genome sequences. Bioinformatics. 2010 Oct 1;26(19):2452-4. Epub 2010 Aug 9. PubMed PMID: 20696734. doi: http://dx.doi.org/10.1093/bioinformatics/btq454
    5. Demetriou K, Kapazoglou A, Bladenopoulos K, Tsaftaris AS: Epigenetic chromatin modifiers in barley: II. Characterization and expression analysis of the HDA1 family of barley histone deacetylases during development and in response to jasmonic acid. Plant molecular biology reporter 2010, 28(1):9-21. doi: http://dx.doi.org/10.1007/s11105-009-0121-4
    6. Ganopoulos IV, Argiriou A, Tsaftaris AS: Determination of self-incompatible genotypes in 21 cultivated sweet cherry cultivars in Greece and implications for orchard cultivation. The journal of horticultural science & biotechnology Sep 2010, 85(5):444.
    7. Kalivas A, Pasentsis K, Argiriou A, Darzentas N, Tsaftaris AS: famRCA-RACE: a rolling circle amplification race for isolating a family of homologous cDNAs in one reaction and its application to obtain NAC genes transcription factors from crocus (Crocus sativus) flower. Prep Biochem Biotechnol. 2010;40(3):177-87. PubMed PMID: 20623429. doi: http://dx.doi.org/10.1080/10826068.2010.488507
    8. Kalivas A, Pasentsis K, Argiriou A, Tsaftaris AS: Isolation, characterization, and expression analysis of an NAP-like cDNA from Crocus (Crocus sativus L.). Plant molecular biology reporter 2010, 28(4):654-663. doi: http://dx.doi.org/10.1007/s11105-010-0197-x
    9. Kapazoglou A, Tondelli A, Papaefthimiou D, Ampatzidou H, Francia E, Stanca MA, Bladenopoulos K, Tsaftaris AS: Epigenetic chromatin modifiers in barley: IV. The study of barley polycomb group (PcG) genes during seed development and in response to external ABA. BMC Plant Biol. 2010 Apr 21;10:73. PubMed PMID: 20409301. doi: http://dx.doi.org/10.1186/1471-2229-10-73
    10. Kargiotidou A, Kappas I, Tsaftaris A, Galanopoulou D, Farmaki T: Cold acclimation and low temperature resistance in cotton: Gossypium hirsutum phospholipase Dalpha isoforms are differentially regulated by temperature and light. J Exp Bot. 2010 Jun;61(11):2991-3002. Epub 2010 May 17. PubMed PMID: 20478966. doi: http://dx.doi.org/10.1093/jxb/erq124
    11. Madesis P, Osathanunkul M, Georgopoulou U, Gisby MF, Mudd EA, Nianiou I, Tsitoura P, Mavromara P, Tsaftaris A, Day A: A hepatitis C virus core polypeptide expressed in chloroplasts detects anti-core antibodies in infected human sera. J Biotechnol. 2010 Feb 15;145(4):377-86. Epub 2009 Dec 5. PubMed PMID: 19969031. doi: http://dx.doi.org/10.1016/j.jbiotec.2009.12.001
    12. Michailidis G, Argiriou A, Avdi M: Expression of chicken zygote arrest 1 (Zar1) and Zar1-like genes during sexual maturation and embryogenesis. Vet Res Commun. 2010 Feb;34(2):173-84. Epub 2010 Jan 29. PubMed PMID: 20111996. doi: http://dx.doi.org/10.1007/s11259-010-9343-z
    13. Papaefthimiou D, Likotrafiti E, Kapazoglou A, Bladenopoulos K, Tsaftaris A: Epigenetic chromatin modifiers in barley: III. Isolation and characterization of the barley GNAT-MYST family of histone acetyltransferases and responses to exogenous ABA. Plant Physiol Biochem. 2010 Feb-Mar;48(2-3):98-107. Epub 2010 Jan 15. PubMed PMID: 20117010. doi: http://dx.doi.org/10.1016/j.plaphy.2010.01.002
    1. Darzentas N, Hadzidimitriou A, Murray F, Hatzi K, Josefsson P, Laoutaris N, Moreno C, Anagnostopoulos A, Jurlander J, Tsaftaris A, Chiorazzi N, Belessi C, Ghia P, Rosenquist R, Davi F, Stamatopoulos K: A different ontogenesis for chronic lymphocytic leukemia cases carrying stereotyped antigen receptors: molecular and computational evidence. Leukemia. 2010 Jan;24(1):125-32. Epub 2009 Sep 17. PubMed PMID: 19759557. doi: http://dx.doi.org/10.1038/leu.2009.186
    2. Forconi F, Potter KN, Wheatley I, Darzentas N, Sozzi E, Stamatopoulos K, Mockridge CI, Packham G, Stevenson FK: The normal IGHV1-69-derived B-cell repertoire contains stereotypic patterns characteristic of unmutated CLL. Blood. 2010 Jan 7;115(1):71-7. Epub 2009 Nov 3. PubMed PMID: 19887677. doi: http://dx.doi.org/10.1182/blood-2009-06-225813
    3. Hadzidimitriou A, Darzentas N, Karakoli A, Koliouskas D, Tsaftaris A, Anagnostopoulos A, Stamatopoulos K: Coexistence of different types of biallelic immunoglobulin heavy variable gene replacement events in a case of pediatric B precursor acute lymphoblastic leukemia. Leuk Lymphoma. 2010 Sep;51(9):1748-50. PubMed PMID: 20578821. doi: http://dx.doi.org/10.3109/10428194.2010.496508
    4. Kostareli E, Sutton LA, Hadzidimitriou A, Darzentas N, Kouvatsi A, Tsaftaris A, Anagnostopoulos A, Rosenquist R, Stamatopoulos K: Intraclonal diversification of immunoglobulin light chains in a subset of chronic lymphocytic leukemia alludes to antigen-driven clonal evolution. Leukemia. 2010 Jul;24(7):1317-24. Epub 2010 May 13. PubMed PMID: 20463750. doi: http://dx.doi.org/10.1038/leu.2010.90
    5. Marantidou F, Dagklis A, Stalika E, Korkolopoulou P, Saetta A, Anagnostopoulos A, Laoutaris N, Stamatopoulos K, Belessi C, Scouras Z, Patsouris E: Activation-induced cytidine deaminase splicing patterns in chronic lymphocytic leukemia. Blood Cells Mol Dis. 2010 Apr 15;44(4):262-7. Epub 2010 Feb 8. Erratum in: Blood Cells Mol Dis. 2010 Aug 15;45(2):180. Korkolopoulou, Panagiota [corrected to Korkolopoulou, Penelope]. PubMed PMID: 20117026. doi: http://dx.doi.org/10.1016/j.bcmd.2009.12.005
    6. Marincevic M, Cahill N, Gunnarsson R, Isaksson A, Mansouri M, Göransson H, Rasmussen M, Jansson M, Ryan F, Karlsson K, Adami HO, Davi F, Jurlander J, Juliusson G, Stamatopoulos K, Rosenquist R: High-density screening reveals a different spectrum of genomic aberrations in chronic lymphocytic leukemia patients with ‘stereotyped’ IGHV3-21 and IGHV4-34 B-cell receptors. Haematologica. 2010 Sep;95(9):1519-25. Epub 2010 Apr 26. PubMed PMID: 20421269. doi: http://dx.doi.org/10.3324/haematol.2009.021014
    7. Marincevic M, Mansouri M, Kanduri M, Isaksson A, Göransson H, Smedby KE, Jurlander J, Juliusson G, Davi F, Stamatopoulos K, Rosenquist R: Distinct gene expression profiles in subsets of chronic lymphocytic leukemia expressing stereotyped IGHV4-34 B-cell receptors. Haematologica. 2010 Dec;95(12):2072-9. Epub 2010 Aug 26. PubMed PMID: 20801898. doi: http://dx.doi.org/10.3324/haematol.2010.028639
    8. Salido M, Baró C, Oscier D, Stamatopoulos K, Dierlamm J, Matutes E, Traverse-Glehen A, Berger F, Felman P, Thieblemont C, Gesk S, Athanasiadou A, Davis Z, Gardiner A, Milla F, Ferrer A, Mollejo M, Calasanz MJ, Florensa L, Espinet B, Luño E, Wlodarska I, Verhoef G, García-Granero M, Salar A, Papadaki T, Serrano S, Piris MA, Solé F: Cytogenetic aberrations and their prognostic value in a series of 330 splenic marginal zone B-cell lymphomas: a multicenter study of the Splenic B-Cell Lymphoma Group. Blood. 2010 Sep 2;116(9):1479-88. Epub 2010 May 17. PubMed PMID: 20479288. doi: http://dx.doi.org/10.1182/blood-2010-02-267476
    9. Spanoudakis M, Koutala H, Ximeri M, Pyrovolaki K, Stamatopoulos K, Papadaki HA: T-cell receptor Vβ repertoire analysis in patients with chronic idiopathic neutropenia demonstrates the presence of aberrant T-cell expansions. Clin Immunol. 2010 Dec;137(3):384-95. Epub 2010 Sep 22. PubMed PMID: 20864416. doi: http://dx.doi.org/10.1016/j.clim.2010.08.011
    10. Stamatopoulos K: Antigens in CLL: themes and variations. Blood. 2010 May 13;115(19):3855-6. PubMed PMID: 20466865. doi: http://dx.doi.org/10.1182/blood-2010-02-270249

    2009

    1. Tsaftaris A, Pasentzis K, Argiriou A: Rolling circle amplification of genomic templates for inverse PCR (RCA-GIP): a method for 5′- and 3′-genome walking without anchoring. Biotechnol Lett. 2010 Jan;32(1):157-61. Epub 2009 Sep 17. PubMed PMID: 19760115. doi: http://dx.doi.org/10.1007/s10529-009-0128-9
    2. Akritidis P, Mylona PV, Tsaftaris AS, Polidoros AN: Genetic diversity assessment in Greek Medicago truncatula genotypes using microsatellite markers. Biologia Plantarum 2009, 53(2):343-346. doi: http://dx.doi.org/10.1007/s10535-009-0063-6
    3. Chatzidimitriadou K, Nianiou-Obeidat I, Madesis P, Perl-Treves R, Tsaftaris A: Expression of SOD transgene in pepper confer stress tolerance and improve shoot regeneration. Electronic Journal of Biotechnology 2009, 12(4):7-8. doi: http://dx.doi.org/10.2225/vol12-issue4-fulltext-10
    4. Demetriou K, Kapazoglou A, Tondelli A, Francia E, Stanca MA, Bladenopoulos K, Tsaftaris AS: Epigenetic chromatin modifiers in barley: I. Cloning, mapping and expression analysis of the plant specific HD2 family of histone deacetylases from barley, during seed development and after hormonal treatment. Physiol Plant. 2009 Jul;136(3):358-68. Epub 2009 Apr 4. PubMed PMID: 19470089. doi: http://dx.doi.org/10.1111/j.1399-3054.2009.01236.x
    5. Kalamaki MS, Alexandrou D, Lazari D, Merkouropoulos G, Fotopoulos V, Pateraki I, Aggelis A, Carrillo-López A, Rubio-Cabetas MJ, Kanellis AK: Over-expression of a tomato N-acetyl-L-glutamate synthase gene (SlNAGS1) in Arabidopsis thaliana results in high ornithine levels and increased tolerance in salt and drought stresses. J Exp Bot. 2009;60(6):1859-71. Epub 2009 Apr 8. PubMed PMID: 19357433. doi: http://dx.doi.org/10.1093/jxb/erp072
    6. Maniatsi S, Kappas I, Baxevanis AD, Farmaki T, Abatzopoulos TJ: Sharp phylogeographic breaks and patterns of genealogical concordance in the brine shrimp Artemia franciscana. Int J Mol Sci. 2009 Dec 18;10(12):5455-70. PubMed PMID: 20054480. doi: http://dx.doi.org/10.3390/ijms10125455
    7. Michailidis G, Argiriou A, Darzentas N, Tsaftaris A: Analysis of xyloglucan endotransglycosylase/hydrolase (XTH) genes from allotetraploid (Gossypium hirsutum) cotton and its diploid progenitors expressed during fiber elongation. J Plant Physiol. 2009 Mar 1;166(4):403-16. Epub 2008 Sep 11. PubMed PMID: 18789555. doi: http://dx.doi.org/10.1016/j.jplph.2008.06.013
    8. Michailidis G, Kalivas A, Avdi M, Argiriou A: Expression and characterisation of the maternal factor Zygote arrest 1 (Zar1) gene in chicken tissues and embryos. Journal of Biological Research 2009, 11:21-27.
    9. Tani E, Polidoros AN, Flemetakis E, Stedel C, Kalloniati C, Demetriou K, Katinakis P, Tsaftaris AS. Characterization and expression analysis of AGAMOUS-like, SEEDSTICK-like, and SEPALLATA-like MADS-box genes in peach (Prunus persica) fruit. Plant Physiol Biochem. 2009 Aug;47(8):690-700. Epub 2009 Apr 9. PubMed PMID: 19409800. doi: http://dx.doi.org/10.1016/j.plaphy.2009.03.013
    1. Dagklis A, Fazi C, Sala C, Cantarelli V, Scielzo C, Massacane R, Toniolo D, Caligaris-Cappio F, Stamatopoulos K, Ghia P: The immunoglobulin gene repertoire of low-count chronic lymphocytic leukemia (CLL)-like monoclonal B lymphocytosis is different from CLL: diagnostic implications for clinical monitoring. Blood. 2009 Jul 2;114(1):26-32. Epub 2008 Nov 24. PubMed PMID: 19029437. doi: http://dx.doi.org/10.1182/blood-2008-09-176933
    2. Hadzidimitriou A, Darzentas N, Murray F, Smilevska T, Arvaniti E, Tresoldi C, Tsaftaris A, Laoutaris N, Anagnostopoulos A, Davi F, Ghia P, Rosenquist R, Stamatopoulos K, Belessi C: Evidence for the significant role of immunoglobulin light chains in antigen recognition and selection in chronic lymphocytic leukemia. Blood. 2009 Jan 8;113(2):403-11. Epub 2008 Oct 23. PubMed PMID: 18948572. doi: http://dx.doi.org/10.1182/blood-2008-07-166868
    3. Kostareli E, Hadzidimitriou A, Stavroyianni N, Darzentas N, Athanasiadou A, Gounari M, Bikos V, Agathagelidis A, Touloumenidou T, Zorbas I, Kouvatsi A, Laoutaris N, Fassas A, Anagnostopoulos A, Belessi C, Stamatopoulos K: Molecular evidence for EBV and CMV persistence in a subset of patients with chronic lymphocytic leukemia expressing stereotyped IGHV4-34 B-cell receptors. Leukemia. 2009 May;23(5):919-24. Epub 2009 Jan 15. PubMed PMID: 19148139. doi: http://dx.doi.org/10.1038/leu.2008.379
    4. Stamatopoulos K: CLL: promiscuity leads to risks. Blood. 2009 Oct 22;114(17):3508-9. PubMed PMID: 19850748. doi: http://dx.doi.org/10.1182/blood-2009-08-239897
    5. Sutton LA, Kostareli E, Hadzidimitriou A, Darzentas N, Tsaftaris A, Anagnostopoulos A, Rosenquist R, Stamatopoulos K: Extensive Intraclonal diversification in a subgroup of chronic lymphocytic leukemia patients with stereotyped IGHV4-34 receptors: implications for ongoing interactions with antigen. Blood. 2009 Nov 12;114(20):4460-8. Epub 2009 Aug 27. PubMed PMID: 19713457. doi: http://dx.doi.org/10.1182/blood-2009-05-221309

    2008

    1. Akritidis P, Pasentsis K, Tsaftaris AS, Mylona PV, Polidoros AN: Identification of unknown genetically modified material admixed in conventional cotton seed and development of an event-specific detection method. Electronic Journal of Biotechnology 2008, 11(2):76-83. doi: http://dx.doi.org/10.2225/vol11-issue2-fulltext-11
    2. Amari F, Fettouche A, Samra MA, Kefalas P, Kampranis SC, Makris AM: Antioxidant small molecules confer variable protection against oxidative damage in yeast mutants. J Agric Food Chem. 2008 Dec 24;56(24):11740-51. PubMed PMID: 19049288. doi: http://dx.doi.org/10.1021/jf802829r
    3. Argiriou A, Michailidis G, Tsaftaris AS: Characterization and expression analysis of TERMINAL FLOWER1 homologs from cultivated alloteraploid cotton (Gossypium hirsutum) and its diploid progenitors. J Plant Physiol. 2008 Oct 9;165(15):1636-46. Epub 2008 Jan 2. PubMed PMID: 18171595. doi: http://dx.doi.org/10.1016/j.jplph.2007.10.013
    4. Kargiotidou A, Deli D, Galanopoulou D, Tsaftaris A, Farmaki T: Low temperature and light regulate delta 12 fatty acid desaturases (FAD2) at a transcriptional level in cotton (Gossypium hirsutum). J Exp Bot. 2008;59(8):2043-56. Epub 2008 May 2. PubMed PMID: 18453533. doi: http://dx.doi.org/10.1093/jxb/ern065
    5. Merkouropoulos G, Andreasson E, Hess D, Boller T, Peck SC: An Arabidopsis protein phosphorylated in response to microbial elicitation, AtPHOS32, is a substrate of MAP kinases 3 and 6. J Biol Chem. 2008 Apr 18;283(16):10493-9. Epub 2008 Feb 18. PubMed PMID: 18285339. doi: http://dx.doi.org/10.1074/jbc.M800735200
    6. Nianiou I, Kalantidis K, Madesis P, Georgopoulou U, Mavromara P, Tsaftaris A: Expression of an HCV core antigen coding gene in tobacco (N. tabacum L.). Prep Biochem Biotechnol. 2008;38(4):411-21. PubMed PMID: 18800303. doi: http://dx.doi.org/10.1080/10826060802325667
    7. Tsaftaris AS, Polidoros AN, Kapazoglou A, Tani E, Kovacevic NM: Epigenetics and plant breeding. Plant Breeding Reviews 2008, 30:49. doi: http://dx.doi.org/10.1002/9780470380130.ch2
    8. Tichý M: Bock, R.: Cell and Molecular Biology of Plastids. Photosynthetica 2008, 46(3):377-377. doi: http://dx.doi.org/10.1007/978-3-540-75376-6
    9. Sheppard AE, Ayliffe MA, Blatch L, Day A, Delaney SK, Khairul-Fahmy N, Li Y, Madesis P, Pryor AJ, Timmis JN: Transfer of plastid DNA to the nucleus is elevated during male gametogenesis in tobacco. Plant Physiol. 2008 Sep;148(1):328-36. Epub 2008 Jul 25. PubMed PMID: 18660434. doi: http://dx.doi.org/10.1104/pp.108.119107
    10. Dixon DP, Lapthorn A, Madesis P, Mudd EA, Day A, Edwards R: Binding and glutathione conjugation of porphyrinogens by plant glutathione transferases. J Biol Chem. 2008 Jul 18;283(29):20268-76. Epub 2008 May 20. PubMed PMID: 18492666. doi: http://dx.doi.org/10.1074/jbc.M802026200
    1. Athanasiadou A, Stamatopoulos K, Gaitatzi M, Stavroyianni N, Fassas A, Anagnostopoulos A: Recurrent cytogenetic findings in subsets of patients with chronic lymphocytic leukemia expressing IgG-switched stereotyped immunoglobulins. Haematologica. 2008 Mar;93(3):473-4. PubMed PMID: 18310544. doi: http://dx.doi.org/10.3324/haematol.11872
    2. Chiotoglou I, Smilevska T, Samara M, Likousi S, Belessi C, Athanasiadou I, Stavroyianni N, Samara S, Laoutaris N, Vamvakopoulos N, Anagnostopoulos A, Fassas A, Stamatopoulos K, Kollia P: Predominantly post-transcriptional regulation of activation molecules in chronic lymphocytic leukemia: the case of transferrin receptors. Blood Cells Mol Dis. 2008 Sep-Oct;41(2):203-9. Epub 2008 Jul 14. PubMed PMID: 18621559. doi: http://dx.doi.org/10.1016/j.bcmd.2008.05.003
    3. Davi F, Rosenquist R, Ghia P, Belessi C, Stamatopoulos K: Determination of IGHV gene mutational status in chronic lymphocytic leukemia: bioinformatics advances meet clinical needs. Leukemia. 2008 Jan;22(1):212-4. Epub 2007 Oct 4. PubMed PMID: 17914413.
    4. Ghia P, Chiorazzi N, Stamatopoulos K: Microenvironmental influences in chronic lymphocytic leukaemia: the role of antigen stimulation. J Intern Med. 2008 Dec;264(6):549-62. Review. PubMed PMID: 19017179. doi: http://dx.doi.org/10.1111/j.1365-2796.2008.02030.x
    5. Kostareli E, Smilevska T, Stamatopoulos K, Kouvatsi A, Anagnostopoulos A: Chronic lymphocytic leukaemia: an immunobiology approach. Srp Arh Celok Lek. 2008 May-Jun;136(5-6):319-23. Review. PubMed PMID: 18792635.
    6. Matutes E, Oscier D, Montalban C, Berger F, Callet-Bauchu E, Dogan A, Felman P, Franco V, Iannitto E, Mollejo M, Papadaki T, Remstein ED, Salar A, Solé F, Stamatopoulos K, Thieblemont C, Traverse-Glehen A, Wotherspoon A, Coiffier B, Piris MA: Splenic marginal zone lymphoma proposals for a revision of diagnostic, staging and therapeutic criteria. Leukemia. 2008 Mar;22(3):487-95. Epub 2007 Dec 20. Review. PubMed PMID: 18094718.
    7. Murray F, Darzentas N, Hadzidimitriou A, Tobin G, Boudjogra M, Scielzo C, Laoutaris N, Karlsson K, Baran-Marzsak F, Tsaftaris A, Moreno C, Anagnostopoulos A, Caligaris-Cappio F, Vaur D, Ouzounis C, Belessi C, Ghia P, Davi F, Rosenquist R, Stamatopoulos K: Stereotyped patterns of somatic hypermutation in subsets of patients with chronic lymphocytic leukemia: implications for the role of antigen selection in leukemogenesis. Blood. 2008 Feb 1;111(3):1524-33. Epub 2007 Oct 24. PubMed PMID: 17959859.
    8. Papadaki T, Stamatopoulos K, Mavrommatis T, Anagnostopoulos A, Anagnostou D: A unique case of IgD-only splenic marginal-zone lymphoma with mutated immunoglobulin genes: ontogenetic implications. Leuk Res. 2008 Jan;32(1):155-7. Epub 2007 Apr 8. PubMed PMID: 17420049.
    9. Smilevska T, Tsakou E, Hadzidimitriou A, Bikos V, Stavroyianni N, Laoutaris N, Fassas A, Alphanagnostopoulos A, Papadaki T, Belessi C, Stamatopoulos K: Immunoglobulin kappa gene repertoire and somatic hypermutation patterns in follicular lymphoma. Blood Cells Mol Dis. 2008 Sep-Oct;41(2):215-8. Epub 2008 Jul 21. PubMed PMID: 18640859. doi: http://dx.doi.org/10.1016/j.bcmd.2008.06.002
    10. Stamatopoulos K, Papadaki T, Pontikoglou C, Athanasiadou I, Stavroyianni N, Bux J, Batsis I, Pyrovolaki K, Paterakis G, Anagnostou D, Anagnostopoulos A, Papadaki HA: Lymphocyte subpopulation imbalances, bone marrow hematopoiesis and histopathology in rituximab-treated lymphoma patients with late-onset neutropenia. Leukemia. 2008 Jul;22(7):1446-9. Epub 2008 Jan 10. PubMed PMID: 18185527. doi: http://dx.doi.org/10.1038/sj.leu.2405077

    2007

    1. Farmaki T, Sanmartín M, Jiménez P, Paneque M, Sanz C, Vancanneyt G, León J, Sánchez-Serrano JJ: Differential distribution of the lipoxygenase pathway enzymes within potato chloroplasts. J Exp Bot. 2007;58(3):555-68. Epub 2007 Jan 8. PubMed PMID: 17210991
    2. Kalivas A, Pasentsis K, Polidoros AN, Tsaftaris AS: Heterotopic expression of B-class floral homeotic genes PISTILLATA/GLOBOSA supports a modified model for crocus (Crocus sativus L.) flower formation. DNA Seq. 2007 Apr;18(2):120-30. PubMed PMID: 17364823
    3. Kamburov A, Goldovsky L, Freilich S, Kapazoglou A, Kunin V, Enright AJ, Tsaftaris A, Ouzounis CA: Denoising inferred functional association networks obtained by gene fusion analysis. BMC Genomics. 2007 Dec 14;8:460. PubMed PMID: 18081932
    4. Mylona PV, Polidoros AN, Scandalios JG: Antioxidant gene responses to ROS- generating xenobiotics in developing and germinated scutella of maize. J Exp Bot. 2007;58(6):1301-12. Epub 2007 Feb 20. PubMed PMID: 17314079
    5. Tani E, Polidoros AN, Tsaftaris AS: Characterization and expression analysis of FRUITFULL- and SHATTERPROOF-like genes from peach (Prunus persica) and their role in split-pit formation. Tree Physiol. 2007 May;27(5):649-59. PubMed PMID: 17267356
    6. Tsaftaris AS, Polidoros AN, Pasentsis K, Kalivas A: Cloning, structural characterization, and phylogenetic analysis of flower MADS-box genes from crocus (Crocus sativus L.). ScientificWorldJournal. 2007 Jun 22;7:1047-62. Review. PubMed PMID: 17619787
    7. Zambounis AG, Paplomatas E, Tsaftaris AS: Intergenic spacer-RFLP analysis and direct quantification of Australian Fusarium oxysporum f. sp. vasinfectum isolates from soil and infected cotton tissues. Plant Disease 2007, 91(12):1564-1573. doi: http://dx.doi.org/10.1094/PDIS-91-12-1564
    8. Panagiotis M, Kritonas K, Irini NO, Kiriaki C, Nicolaos P, Athanasios T: Expression of the yeast cpd1 gene in tobacco confers resistance to the fungal toxin cercosporin. Biomol Eng. 2007 Jun;24(2):245-51. Epub 2007 Jan 12. PubMed PMID: 17317309
    9. Day A, Madesis P, Bock R: Cell and molecular biology of plastids. 2007. doi: http://dx.doi.org/10.1007/978-3-540-75376-6
    10. Day A, Madesis P: DNA replication, recombination, and repair in plastids. In: Cell and molecular biology of plastids. Springer Berlin Heidelberg; 2007: 65-119. doi: http://dx.doi.org/10.1007/978-3-540-75376-6
    11. Bock R: Cell and molecular biology of plastids, vol. 19: Springer Science & Business Media; 2007. doi: http://dx.doi.org/10.1007/978-3-540-75376-6

    2006

    1. Polidoros AN, Pasentsis K, Tsaftaris AS: Rolling circle amplification-RACE: a method for simultaneous isolation of 5′ and 3′ cDNA ends from amplified cDNA templates. Biotechniques. 2006 Jul;41(1):35-6, 38, 40 passim. PubMed PMID: 16869511
    2. Tsaftaris AS, Polidoros AN, Pasentsis K, Kalivas A: Tepal formation and expression pattern of B-class paleo AP3- like MADS-box genes in crocus ( Crocus sativus L.). Plant science 2006, 170(2):238-246. doi: http://dx.doi.org/10.1016/j.plantsci.2005.08.008

    2005

    1. Athanasiadou R, Polidoros AN, Mermigka G, Nianiou-Obeidat I, Tsaftaris AS: Differential expression of CmPP16 homologues in pumpkin (Curcurbita maxima), winter squash (C. moschata) and their interspecific hybrid. Journal of Horticultural Science and Biotechnology 2005, 80(5):643-649.
    2. Polidoros AN, Mylona PV, Pasentsis K, Scandalios JG, Tsaftaris AS: The maize alternative oxidase 1a (Aox1a) gene is regulated by signals related to oxidative stress. Redox Rep. 2005;10(2):71-8. PubMed PMID: 15949126
    3. Tsaftaris AS, Pasentsis K, Polidoros AN: Isolation of a differentially spliced C-type flower specific AG-like MADS-box gene from Crocus sativus and characterization of its expression. Biologia plantarum 2005, 49(4):499-504. doi: http://dx.doi.org/10.1007/s10535-005-0041-6
    4. Peña L: Transgenic plants: methods and protocols, vol. 286: Springer Science & Business Media; 2005. doi: http://dx.doi.org/10.1385/1592598277
    5. Day A, Kode V, Madesis P, Iamtham S: Simple and efficient removal of marker genes from plastids by homologous recombination. Methods Mol Biol. 2005;286:255-70. PubMed PMID: 15310927

    2004

    1. Tsaftaris AS, Pasentsis K, Iliopoulos I, Polidoros AN: Isolation of three homologous AP1 -like MADS-box genes in crocus ( Crocus sativus L.) and characterization of their expression. Plant Science 2004, 166(5):1235-1243. doi: http://dx.doi.org/10.1016/j.plantsci.2003.12.037