Reference 49 2023
Sachinidis, Trachana M, Taparkou A, Gavriilidis G, Verginis P, Psomopoulos F, Adamichou C, Boumpas D, Garyfallos A. Investigating the Role of T-bet+ B Cells (ABCs/DN) in the Immunopathogenesis of Systemic Lupus Erythematosus. Mediterranean Journal of Rheumatology 2023, vol. 34, no. 1, p. 117; doi: 10.31138/mjr.34.1.117
Reference 41 2023
Psomopoulos F, Goble C, Castro L J, Harrow J, Tosatto S C E, A Roadmap for Defining Machine Learning Standards in Life Sciences. Artificial Intelligence for Science, World Scientific 2023, pp. 399–410.
Reference 42 2023
Gavriilidis I, Vasileiou V, Orfanou A, Ishaque N, Psomopoulos F. A mini-review on perturbation modelling across single-cell omic modalities. Computational and Structural Biotechnology Journal 2024, vol. 23, pp. 1886–1896;doi: 10.1016/j.csbj.2024.04.058
Reference 43 2023
Makarov V, Chabbert C, Koletou E, Psomopoulos F, Kurbatova N, Ramirez S, Nelson C, Natarajan P, Neupane B. Good machine learning practices: Learnings from the modern pharmaceutical discovery enterprise. Computers in Biology and Medicine 2024, vol. 177, p. 108632; doi: 10.1016/j.compbiomed.2024.108632
Reference 44 2023
Pechlivanis N, Karakatsoulis G, Kyritsis KA, Tsagiopoulou M, Sgardelis S, Kappas I, Psomopoulos FE. Microbial Co-Occurrence Network Demonstrates Spatial and Climatic Trends for Global Soil Diversity. Scientific Data 2024, vol. 11, issue 1, p. 672; doi:10.1038/s41597-024-03528-1
Reference 45 2023
Sutcliffe S. G. et al. Tracking SARS-CoV-2 variants of concern in wastewater: an assessment of nine computational tools using simulated genomic data. Microbial Genomics 2024, vol. 10, no. 5; doi:
Reference 46 2023
Kyritsis K A, Pechlivanis N, Psomopoulos F. Software pipelines for RNA-Seq, ChIP-Seq and germline variant calling analyses in common workflow language (CWL). Frontiers in Bioinformatics 2023, vol. 3; doi: 10.3389/fbinf.2023.1275593
Reference 47 2023
Iatrou et al., “N-Glycosylation of the Ig Receptors Shapes the Antigen Reactivity. Chronic Lymphocytic Leukemia Subset #201. The Journal of Immunology 2023, vol. 211, no. 5, pp. 743–754; doi: 10.4049/jimmunol.2300330
Reference 48 2023
Huerta E A et al., FAIR for AI: An interdisciplinary and international community building perspective. Scientific Data 2023, vol 10, no. 1; doi: 10.1038/s41597-023-02298-6
Reference 26 2023
Zhao, Y., Liang, F., Xie, Y., Duan, Y. T., Andeadelli, A., Pateraki, I., Makris, A. M., Pomorski, T. G., Staerk, D., & Kampranis, S. C. Oxetane Ring Formation in Taxol Biosynthesis Is Catalyzed by a Bifunctional Cytochrome P450 Enzyme. Journal of the American Chemical Society 2023; doi: 10.1021/jacs.3c10864